Alternatives and similar repositories for py-upset

Users that are interested in py-upset are comparing it to the libraries listed below

• jnothman / UpSetPlot
  Draw UpSet plots with Matplotlib
  ☆373Updated last year
• cytoscape / py2cytoscape
  Python utilities for Cytoscape and Cytoscape.js
  ☆176Updated 3 years ago
• konstantint / matplotlib-venn
  Area-weighted venn-diagrams for Python/matplotlib
  ☆565Updated 10 months ago
• VCG / upset
  UpSet - Visualizing Intersecting Sets
  ☆238Updated 3 years ago
• MaayanLab / clustergrammer
  An interactive heatmap visualization built using D3.js
  ☆238Updated 2 years ago
• ericmjl / hiveplot
  Hive Plots in using Python & matplotlib!
  ☆71Updated 7 years ago
• eaton-lab / toytree
  A minimalist tree plotting library using toyplot graphs
  ☆183Updated 3 weeks ago
• pyranges / ncls
  NCLS. Basically a static interval-tree that is silly fast for both construction and lookups. Deprecated but maintained.
  ☆224Updated 5 months ago
• themantalope / pydendroheatmap
  A tool for generating heatmaps from hierarchically clustered data.
  ☆40Updated 7 years ago
• cggh / scikit-allel
  A Python package for exploring and analysing genetic variation data
  ☆306Updated 3 weeks ago
• etetoolkit / ete
  Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection …
  ☆860Updated last week
• tctianchi / pyvenn
  2 ~ 6 sets venn diagram for python
  ☆349Updated last year
• jdrudolph / goenrich
  GO enrichment with python -- pandas meets networkx
  ☆88Updated 5 years ago
• YeoLab / flotilla
  Reproducible machine learning analysis of gene expression and alternative splicing data
  ☆125Updated 2 years ago
• KrishnaswamyLab / PHATE
  PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.
  ☆531Updated last month
• gecko984 / supervenn
  supervenn: precise and easy-to-read multiple sets visualization in Python
  ☆362Updated last year
• MaayanLab / clustergrammer-widget
  The Clustergrammer interactive Jupyter notebook widget
  ☆47Updated 3 years ago
• ucsd-ccbb / visJS2jupyter
  visJS2jupyter is a tool to bring the interactivity of networks created with vis.js into jupyter notebook cells
  ☆78Updated 2 years ago
• anazalea / pySankey
  create sankey diagrams with matplotlib
  ☆276Updated last year
• maclandrol / FisherExact
  Fisher exact test for mxn contingency table in python
  ☆38Updated last year
• kylessmith / dynamicTreeCut
  Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.
  ☆41Updated 4 years ago
• LankyCyril / pyvenn
  Python module for plotting Venn diagrams of 2..6 sets
  ☆131Updated 3 years ago
• higlass / higlass
  Fast, flexible and extensible genome browser.
  ☆337Updated 2 weeks ago
• GuyAllard / markov_clustering
  markov clustering in python
  ☆175Updated 4 years ago
• gregversteeg / bio_corex
  A flexible version of CorEx developed for bio-data challenges that handles missing data, continuous/discrete variables, multi-CPU, overla…
  ☆143Updated 4 years ago
• ericmjl / nxviz
  Visualization Package for NetworkX
  ☆476Updated 9 months ago
• fengwangPhysics / matplotlib-chord-diagram
  plot chord diagram with matplotlib
  ☆84Updated 4 years ago
• ismms-himc / clustergrammer2
  "Dimensionality-increasing" data visualization tool and interactive WebGL Jupyter widget built for single-cell data.
  ☆118Updated 3 years ago
• gosling-lang / gos
  A declarative interactive genomics visualization library for Python.
  ☆232Updated last month
• cgat-developers / ruffus
  CGAT-ruffus is a lightweight python module for running computational pipelines
  ☆175Updated 4 years ago