dpryan79 / Answers
Random code produced to answer questions on biostars/seqanswers/etc.
☆8Updated 7 years ago
Alternatives and similar repositories for Answers:
Users that are interested in Answers are comparing it to the libraries listed below
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆70Updated 2 years ago
- Tutorial for AMSI BioInfoSummer 2018☆29Updated 6 years ago
- Tutorials covering various topics in genomic data analysis.☆17Updated 6 years ago
- How to use CENTIPEDE to determine if a transcription factor is bound.☆26Updated 7 years ago
- An R interface to the MEME Suite☆50Updated 7 months ago
- BigWig and BAM utilities☆96Updated last year
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- ☆78Updated 11 years ago
- tools to find circRNAs in RNA-seq data☆42Updated 7 years ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 5 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- ☆30Updated 6 years ago
- Genomic Association Tester☆31Updated 2 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- Reduce + Visualize Gene Ontology☆27Updated 2 weeks ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated 2 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- RiboDiff: Tool to detect changes in translational efficiency based on ribosome footprinting data☆23Updated 8 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated 9 months ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- ☆49Updated 4 years ago
- csf fork of fastqc for usage on selected reads of unaligned bam file☆49Updated 12 years ago
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆28Updated last month
- piRNA pipeline collection developed in the Zamore Lab and ZLab in UMass Med School☆59Updated 10 months ago
- RNA-seq Quantification of Alternative Polyadenylation☆46Updated last year
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆44Updated 2 years ago
- RNA-Sequencing data differential expression analysis pipeline. Performs: genome coverage (via bedtools and HTSeq), generates Circos code …☆55Updated 12 years ago
- This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.☆83Updated 3 months ago