titipata / pubmed_parserLinks
A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset
☆711Updated 4 months ago
Alternatives and similar repositories for pubmed_parser
Users that are interested in pubmed_parser are comparing it to the libraries listed below
Sorting:
- PyMed is a Python library that provides access to PubMed.☆212Updated 4 years ago
- BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).☆584Updated 2 years ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆341Updated 4 years ago
- BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences☆608Updated 2 years ago
- ☆152Updated 2 years ago
- System for Medical Concept Extraction and Linking☆425Updated last year
- BioBERT: a pre-trained biomedical language representation model for biomedical text mining☆702Updated 5 years ago
- Medical Concept Annotation Tool☆515Updated 4 months ago
- A full spaCy pipeline and models for scientific/biomedical documents.☆1,906Updated last week
- Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.☆136Updated 3 months ago
- PyTorch Implementation of BioBERT☆347Updated 2 years ago
- BERN2: an advanced neural biomedical namedentity recognition and normalization tool☆201Updated last year
- Biomedical Named Entity Recognition and Normalization of Diseases, Chemicals and Genenetic entity classes through the use of state-of-the…☆122Updated 3 years ago
- Library for clinical NLP with spaCy.☆618Updated 4 months ago
- Python wraper for MetaMap☆173Updated 5 years ago
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆72Updated last week
- BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.☆296Updated 3 years ago
- Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported f…☆569Updated 3 months ago
- A Serverless Text Annotation Tool for Corpus Development☆57Updated 9 months ago
- Batch download articles based on PMID (Pubmed ID)☆131Updated 2 years ago
- Medical Text Mining and Information Extraction with spaCy☆439Updated 3 years ago
- ☆221Updated last year
- Automatic synthesis of RCTs☆167Updated 3 years ago
- ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)☆431Updated 3 years ago
- A neural named entity recognition and multi-type normalization tool for biomedical text mining☆177Updated 3 years ago
- A Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).☆157Updated 2 years ago
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆176Updated 2 years ago
- S2ORC: The Semantic Scholar Open Research Corpus: https://www.aclweb.org/anthology/2020.acl-main.447/☆992Updated last year
- repository for Publicly Available Clinical BERT Embeddings☆741Updated 5 years ago
- PubMed PICO Element Detection Dataset☆58Updated 7 years ago