titipata / pubmed_parser
A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset
☆619Updated last month
Alternatives and similar repositories for pubmed_parser:
Users that are interested in pubmed_parser are comparing it to the libraries listed below
- PyMed is a Python library that provides access to PubMed.☆203Updated 3 years ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆317Updated 3 years ago
- Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.☆106Updated last month
- BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).☆566Updated last year
- ☆146Updated last year
- Automatic synthesis of RCTs☆145Updated 2 years ago
- Biomedical Named Entity Recognition and Normalization of Diseases, Chemicals and Genenetic entity classes through the use of state-of-the…☆108Updated 3 years ago
- BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences☆583Updated last year
- A neural named entity recognition and multi-type normalization tool for biomedical text mining☆176Updated 2 years ago
- BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.☆290Updated 3 years ago
- Batch download articles based on PMID (Pubmed ID)☆117Updated last year
- [ACL 2022] LinkBERT: A Knowledgeable Language Model 😎 Pretrained with Document Links☆430Updated 2 years ago
- Parsers for scientific papers (PDF2JSON, TEX2JSON, JATS2JSON)☆356Updated 10 months ago
- PyTorch Implementation of BioBERT☆317Updated last year
- BioBERT: a pre-trained biomedical language representation model for biomedical text mining☆678Updated 4 years ago
- S2ORC: The Semantic Scholar Open Research Corpus: https://www.aclweb.org/anthology/2020.acl-main.447/☆872Updated 9 months ago
- PubMed PICO Element Detection Dataset☆56Updated 6 years ago
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆163Updated last year
- A Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).☆157Updated last year
- PubMedQA: A Dataset for Biomedical Research Question Answering☆289Updated last year
- BERN2: an advanced neural biomedical namedentity recognition and normalization tool☆179Updated 10 months ago
- System for Medical Concept Extraction and Linking☆394Updated 6 months ago
- PubMed 200k RCT dataset: a large dataset for sequential sentence classification.☆193Updated last year
- Library for clinical NLP with spaCy.☆547Updated 2 months ago
- Repository for the Human Disease Ontology.☆354Updated this week
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆45Updated 4 years ago
- Medical Concept Annotation Tool☆474Updated this week
- Tools for curating biomedical training data for large-scale language modeling☆467Updated 2 months ago
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆79Updated 2 years ago
- A full spaCy pipeline and models for scientific/biomedical documents.☆1,753Updated 2 months ago