Alternatives and similar repositories for pubmed_parser

Users that are interested in pubmed_parser are comparing it to the libraries listed below

• gijswobben / pymed
  PyMed is a Python library that provides access to PubMed.
  ☆212Updated 3 years ago
• ncbi-nlp / bluebert
  BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).
  ☆580Updated 2 years ago
• metapub / metapub
  Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.
  ☆128Updated last month
• ncbi-nlp / BioSentVec
  BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences
  ☆600Updated 2 years ago
• chanzuckerberg / MedMentions
  A corpus of Biomedical papers annotated with mentions of UMLS entities.
  ☆334Updated 3 years ago
• Georgetown-IR-Lab / QuickUMLS
  System for Medical Concept Extraction and Linking
  ☆417Updated last year
• DiseaseOntology / HumanDiseaseOntology
  Repository for the Human Disease Ontology.
  ☆373Updated this week
• librairy / bio-ner
  Biomedical Named Entity Recognition and Normalization of Diseases, Chemicals and Genenetic entity classes through the use of state-of-the…
  ☆121Updated 3 years ago
• ncbi-nlp / BioWordVec
  ☆152Updated last year
• allenai / scispacy
  A full spaCy pipeline and models for scientific/biomedical documents.
  ☆1,880Updated this week
• dmis-lab / BERN2
  BERN2: an advanced neural biomedical namedentity recognition and normalization tool
  ☆196Updated last year
• CogStack / MedCAT
  Medical Concept Annotation Tool
  ☆511Updated 2 months ago
• AnthonyMRios / pymetamap
  Python wraper for MetaMap
  ☆173Updated 5 years ago
• naver / biobert-pretrained
  BioBERT: a pre-trained biomedical language representation model for biomedical text mining
  ☆699Updated 5 years ago
• bigscience-workshop / biomedical
  Tools for curating biomedical training data for large-scale language modeling
  ☆484Updated 9 months ago
• dmis-lab / biobert-pytorch
  PyTorch Implementation of BioBERT
  ☆341Updated 2 years ago
• dmis-lab / bern
  A neural named entity recognition and multi-type normalization tool for biomedical text mining
  ☆177Updated 3 years ago
• ijmarshall / robotreviewer
  Automatic synthesis of RCTs
  ☆162Updated 3 years ago
• jind11 / PubMed-PICO-Detection
  PubMed PICO Element Detection Dataset
  ☆58Updated 7 years ago
• MannLabs / CKG
  Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported f…
  ☆520Updated 3 weeks ago
• ncbi-nlp / BLUE_Benchmark
  BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.
  ☆297Updated 3 years ago
• OHDSI / Criteria2Query
  [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…
  ☆70Updated 2 weeks ago
• billgreenwald / Pubmed-Batch-Download
  Batch download articles based on PMID (Pubmed ID)
  ☆129Updated last year
• medspacy / medspacy
  Library for clinical NLP with spaCy.
  ☆603Updated last month
• kormilitzin / med7
  ☆219Updated 9 months ago
• luozhhub / pyMeSHSim
  a module to calculate the MeSH similarity
  ☆26Updated 3 years ago
• jakelever / kindred
  A Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).
  ☆158Updated 2 years ago
• allenai / s2orc
  S2ORC: The Semantic Scholar Open Research Corpus: https://www.aclweb.org/anthology/2020.acl-main.447/
  ☆974Updated last year
• kermitt2 / grobid_client_python
  Python client for GROBID Web services
  ☆362Updated 3 weeks ago
• kexinhuang12345 / clinicalBERT
  ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)
  ☆426Updated 2 years ago