This repository aims to track the progress in BioNER and give a related paper list and an overview of the state-of-the-art (SOTA).
☆201Feb 23, 2021Updated 5 years ago
Alternatives and similar repositories for BioNER-Progress
Users that are interested in BioNER-Progress are comparing it to the libraries listed below
Sorting:
- Cross-type Biomedical Named Entity Recognition with Deep Multi-task Learning (Bioinformatics'19)☆135Jul 25, 2024Updated last year
- ☆233Aug 15, 2017Updated 8 years ago
- Att-ChemdNER☆111Jul 17, 2018Updated 7 years ago
- ☆48Aug 30, 2023Updated 2 years ago
- CollaboNet for Biomedical Named Entity Recognition☆48Feb 5, 2019Updated 7 years ago
- Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining☆2,186Aug 13, 2023Updated 2 years ago
- Learning Named Entity Tagger from Domain-Specific Dictionary☆485Oct 5, 2019Updated 6 years ago
- A neural named entity recognition and multi-type normalization tool for biomedical text mining☆177Apr 18, 2022Updated 3 years ago
- ☆50May 29, 2022Updated 3 years ago
- 中文医学NLP公开资源整理:术语集/语料库/词向量/预训练模型/知识图谱/命名实体识别/QA/信息抽取/模型/论文/etc☆2,541Jan 17, 2024Updated 2 years ago
- This is the repository of paper "low-resource Name Tagging Learned with Weakly Labeled Data" accepted at EMNLP 2019☆21Feb 7, 2020Updated 6 years ago
- Medical Named Entity Recognition implement using bi-directional lstm and crf model with char embedding.CCKS2017中文电子病例命名实体识别项目,主要实现使用了基于字…☆440Apr 1, 2022Updated 3 years ago
- MIC-CIS entry in PharmaCoNER, Bacteria Biotope (BB 2029) & SeeDev 2019 Shared Tasks in EMNLP '19☆11Feb 22, 2020Updated 6 years ago
- Noise Reduction Methods for Distantly Supervised Biomedical Relation Extraction☆11Oct 25, 2017Updated 8 years ago
- BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.☆296Jan 12, 2022Updated 4 years ago
- DeepIE: Deep Learning for Information Extraction☆1,943Dec 9, 2022Updated 3 years ago
- Python library for working with BioC files☆13Mar 28, 2018Updated 7 years ago
- Chinese NER using Lattice LSTM. Code for ACL 2018 paper.☆1,834Apr 25, 2019Updated 6 years ago
- Lexicon-based Named Entity Recognition☆158Jul 26, 2022Updated 3 years ago
- CCKS2019中文命名实体识别任务。从医疗文本中识别疾病和诊断、解剖部位、影像检查、实验室检验、手术和药物6种命名实体。现已实现基于jieba和AC自动机的baseline构建、基于BiLSTM和CRF的序列标住模型构建。bert的部分代码主要源于https://gith…☆354Oct 9, 2022Updated 3 years ago
- UMLs(一体化医学语言系统)介绍☆44Mar 8, 2018Updated 7 years ago
- Conversion from brat-flavored standoff to CoNLL format☆59Nov 26, 2020Updated 5 years ago
- BioBERT: a pre-trained biomedical language representation model for biomedical text mining☆707Jun 2, 2020Updated 5 years ago
- A LSTM+CRF model for the seq2seq task for Medical named entity recognition in ccks2017☆80Jul 21, 2017Updated 8 years ago
- Hierarchically-Refined Label Attention Network for Sequence Labeling☆293Apr 9, 2021Updated 4 years ago
- ☆26Feb 23, 2026Updated last week
- BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction☆27Nov 30, 2023Updated 2 years ago
- PyTorch Implementation of BioBERT☆350Jun 24, 2023Updated 2 years ago
- Large-scale Exploration of Neural Relation Classification Architectures☆12Nov 15, 2018Updated 7 years ago
- BERN2: an advanced neural biomedical namedentity recognition and normalization tool☆203Mar 28, 2024Updated last year
- Python library for work with BioCreative files☆13Mar 28, 2018Updated 7 years ago
- Classifying Relations via Long Short-Term Memory Networks along Biomedical Ontologies☆15Feb 15, 2023Updated 3 years ago
- Adapt Capsule Network for Name Entity Recognition Task☆10Jun 12, 2019Updated 6 years ago
- 用于生成文本纠错模型(如Gector)需要的大量数据。☆14Jan 5, 2023Updated 3 years ago
- ☆31Jun 26, 2023Updated 2 years ago
- [Medical_NLP ➟ Awesome-AI4Med] medical-related LLMs, Multimodal systems, Datasets, Benchmarks, and more.☆2,539Updated this week
- ccks baidu entity link 实体链接 第一名☆843Dec 19, 2023Updated 2 years ago
- Negative sampling for solving the unlabeled entity problem in NER. ICLR-2021 paper: Empirical Analysis of Unlabeled Entity Problem in Nam…☆134Feb 26, 2022Updated 4 years ago
- ☆12Mar 12, 2021Updated 4 years ago