dlce-eva / python-newick
python package to read and write the Newick format
☆47Updated 3 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for python-newick
- Python library to simulate evolutionary sequence data☆78Updated 2 years ago
- Browser-based utility for phylogenetic tree visualisation.☆38Updated last year
- distance based phylogenetic placement☆25Updated 8 months ago
- Evolution simulator with extinct lineages☆25Updated 2 years ago
- A Python library for fast, thread-safe computations on phylogenetic trees☆27Updated this week
- http://www.combio.pl/alfree☆22Updated 2 years ago
- REINDEER REad Index for abuNDancE quERy☆57Updated 3 months ago
- Python bindings for Bifrost with a NetworkX compatible API☆27Updated last year
- Fast and accurate tool for estimating genomic distances between genome-skims☆39Updated last year
- Ancestral character reconstruction and visualisation for rooted phylogenetic trees☆32Updated 2 months ago
- Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop☆57Updated 7 months ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- Partitioning and analysis methods for large, complex sequence datasets☆38Updated 6 years ago
- Highly customizable, ambiguity-aware dotplots for visual sequence analyses☆90Updated 3 years ago
- Estimating k-mer coverage histogram of genomics data☆76Updated 11 months ago
- De novo estimates of genetic relatedness from next-gen sequencing data☆45Updated 5 years ago
- Phylogenetic inference using Stan☆23Updated last year
- Tandem Repeat Annotation Library☆24Updated last year
- Classify sequencing reads using MinHash.☆48Updated 4 years ago
- Python bindings to bwa mem☆31Updated 4 years ago
- k-mer counting software☆38Updated 2 years ago
- A tool for simulating random mutations in any genome☆36Updated 9 months ago
- Phylogenetic Likelihood Library☆27Updated 3 years ago
- MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.☆46Updated 2 weeks ago
- Efficient calculation of phylogenetic distance matrices.☆45Updated last month
- Genome Contact Map Explorer - gcMapExplorer. Visit:☆21Updated 2 years ago
- Ninja Is Not Just Another OTU Picking Solution☆23Updated 6 years ago
- baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development…☆94Updated last month
- [mu]tation [s]pectrum [h]istory [i]nference☆24Updated 2 years ago
- Deep learning for Metagenome Assembly Error Detection☆26Updated 3 years ago