python package to read and write the Newick format
☆49Mar 13, 2025Updated last year
Alternatives and similar repositories for python-newick
Users that are interested in python-newick are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A centralized repository for network analysis tools.☆11Dec 16, 2019Updated 6 years ago
- Write-once-read-many table for large datasets.☆27Oct 5, 2023Updated 3 years ago
- C++ implementation of a MCMC sampler for the (canonical) SBM☆11Oct 21, 2019Updated 7 years ago
- Simple phylogenetic tree visualization python package for phylogenetic analysis☆68Sep 14, 2024Updated 2 years ago
- Sequence Bloom Trees with All/Some split☆11Oct 30, 2018Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An efficient implementation of a set which can be randomly sampled according to the weights of the elements.☆24May 13, 2024Updated 2 years ago
- Gillespie algorithm for the simulation of spreading processes on complex networks using a composition and rejection scheme.☆11Jul 8, 2021Updated 5 years ago
- Bayesian modelling of bipartite networks☆13Jan 22, 2025Updated last year
- Fast heuristic ARG construction☆12Dec 12, 2016Updated 9 years ago
- Code for "Reconstruction of plant--pollinator networks from observational data"☆21Apr 21, 2022Updated 4 years ago
- in silico typing of the H. influenzae cap locus☆13Jul 15, 2024Updated 2 years ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆31Jul 18, 2025Updated last year
- 🦀 Tumor growth simulation in C++/R☆20Jun 22, 2026Updated 4 months ago
- libstrbuf: A powerful string library for C☆18Oct 15, 2016Updated 10 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- MATLAB and Python + d3js. Webweb is a tool for creating interactive visualizations of networks on the web.☆84Sep 20, 2022Updated 4 years ago
- EcoliTyper: A species-optimized computational pipeline for comprehensive genotyping and surveillance of Escherichia coli. Perfect for cli…☆29Updated this week
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆36Jan 28, 2022Updated 4 years ago
- A Python library for generating random phylogenetic trees and related data☆14Jul 4, 2022Updated 4 years ago
- A Python library for fast, thread-safe computations on phylogenetic trees☆29Feb 19, 2026Updated 8 months ago
- Run Python functions locally or in the cloud. Built for computational science.☆22Oct 4, 2023Updated 3 years ago
- Julia interface to Google's LevelDB key value database☆18May 31, 2024Updated 2 years ago
- Mapping scheme test software, to be extended to sequence graphs.☆10Sep 28, 2022Updated 4 years ago
- Shared k-mer content between two genomes☆18Jun 21, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Estimate node ages of a phylogeny by approximating the phylogenetic likelihood with a multivariate normal distribution.☆13Jun 23, 2025Updated last year
- Concise, readable summaries of network data☆23Aug 1, 2023Updated 3 years ago
- 📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria☆42Oct 28, 2025Updated last year
- ☆12Jun 7, 2024Updated 2 years ago
- Automatically exported from code.google.com/p/qsimscan☆14Updated this week
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated 2 years ago
- Amalgamated likelihood estimation (ALE) is a probabilistic approach to exhaustively explore all reconciled gene trees that can be amalgam…☆55May 14, 2025Updated last year
- FRACTAL: framework for distributed computing to trace large accurate lineages☆24Sep 6, 2022Updated 4 years ago
- Backport of the pickle 5 protocol (PEP 574)☆34Nov 20, 2021Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A method of assessing sequence complexity based on kmer frequencies☆33Apr 9, 2018Updated 8 years ago
- ♥ Efficient Estimation of Evolutionary Distances☆47Sep 8, 2026Updated last month
- Creates a target specific exome_full192.coverage.txt file required by MutSig☆21Sep 15, 2021Updated 5 years ago
- Create and maintain phylogenetic "reference packages" of biological sequences.☆22May 27, 2026Updated 5 months ago
- Phylo.IO JS tree viewer☆36May 12, 2026Updated 5 months ago
- ☆151Oct 11, 2026Updated 3 weeks ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆39Mar 5, 2023Updated 3 years ago