dlce-eva / python-newickLinks
python package to read and write the Newick format
☆48Updated 5 months ago
Alternatives and similar repositories for python-newick
Users that are interested in python-newick are comparing it to the libraries listed below
Sorting:
- Python bindings for Bifrost's compacted colored de Bruijn Graph with a NetworkX-compatible API☆28Updated last year
- Metagenomic profiling and phylogenetic distances via common kmers☆43Updated 4 years ago
- REINDEER REad Index for abuNDancE quERy☆57Updated last month
- A Python library for interacting with ENA's API☆23Updated 4 years ago
- Browser-based utility for phylogenetic tree visualisation.☆39Updated 3 months ago
- Fishers Exact Test for Python (Cython)☆66Updated 5 months ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆45Updated last year
- Python library to simulate evolutionary sequence data☆80Updated 3 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆49Updated 4 years ago
- A resistome profiler for Graphing Resistance Out Of meTagenomes☆67Updated 5 years ago
- Indexing & querying large assembly graphs -- in space, no one can hear you miao!☆119Updated last year
- A small python program to simulate a real-time Nanopore sequencing run based on a previous experiment.☆19Updated 7 years ago
- Histosketching Using Little Kmers☆57Updated 2 years ago
- Sequences from HIV Easily Reconstructed☆27Updated last year
- Visualization of the pan-genome output by panX☆63Updated 2 months ago
- Implementation of Krona to QIIME2☆16Updated last year
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆57Updated 10 years ago
- Estimating k-mer coverage histogram of genomics data☆77Updated last year
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆58Updated 7 years ago
- distance based phylogenetic placement☆27Updated last year
- De novo Extraction of Strains from MetAgeNomes☆71Updated 5 years ago
- ☆74Updated 6 years ago
- Genome Contact Map Explorer - gcMapExplorer. Visit:☆21Updated 3 years ago
- k-mer counting software☆39Updated 3 years ago
- Tandem Repeat Annotation Library☆25Updated 2 years ago
- Simple pure Python SAM parser and objects for working with SAM records☆64Updated 3 years ago
- online notebooks for a review of genome sketching☆61Updated 5 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- De novo estimates of genetic relatedness from next-gen sequencing data☆45Updated 6 years ago
- Load numpy arrays and HDF5 files from VCF (variant call format)☆31Updated 8 years ago