cansyl / CROssBAR
Comprehensive Resource of Biomedical Relations with Deep Learning Applications and Knowledge Graph Representations
☆29Updated last year
Alternatives and similar repositories for CROssBAR:
Users that are interested in CROssBAR are comparing it to the libraries listed below
- Multi-Channel Deep Chemogenomic Modeling of Receptor-Ligand Binding Affinity Prediction for Drug Discovery☆27Updated 3 years ago
- Source code and data repository for "Ensembles of knowledge graph embedding models improve predictions for drug discovery"☆20Updated last year
- HoTS: Sequence-based prediction of binding regions and drug-target interactions.☆26Updated 2 years ago
- ☆15Updated 5 months ago
- ☆11Updated 8 months ago
- code for Gogleva et al manuscript☆45Updated 2 years ago
- Code to accompany the "Understanding the Performance of Knowledge Graph Embeddings in Drug Discovery" manuscript (Artificial Intelligence…☆33Updated 6 months ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆71Updated 9 months ago
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.☆58Updated last year
- ☆25Updated 5 years ago
- Repository of Jupyter Notebooks on Colab, Binder and Huggingface for Bio, Chemistry and Physics☆14Updated last year
- ☆65Updated last year
- StarGazer is a tool designed for rapidly assessing drug repositioning opportunities. It combines multi-source, multi-omics data with a no…☆33Updated last year
- Amino Acid Embedding Representation as Machine Learning Features☆19Updated 6 years ago
- DeepGO with Fuzzy DL☆29Updated 2 years ago
- Code to accompany the "Implications of Topological Imbalance for Representation Learning on Biomedical Knowledge Graphs" (Briefings in B…☆17Updated 2 months ago
- Method for drug repurposing from knowledge graphs and literature☆34Updated 4 years ago
- Learning with uncertainty for biological discovery and design☆33Updated last year
- NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.☆32Updated 9 months ago
- Pipeline for assessing the tractability of potential targets (starting from Gene IDs)☆20Updated last week
- ☆55Updated 4 years ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆32Updated 2 months ago
- Unsupervised neural network for learning embeddings of GO terms.☆16Updated 2 years ago
- Don't worry about DrugBank licensing - write code that knows how to download it automatically☆43Updated this week
- Protein Graph in Python for MetaPath-ML and more.☆18Updated 2 years ago
- ☆16Updated 3 years ago
- ☆10Updated 5 years ago
- PyTorch implementation of Parapred (Liberis et al., 2018) with Paratyping (Richardson et al., 2021)☆18Updated last year
- SPECTRA: Spectral framework for evaluation of biomedical AI models☆37Updated 2 weeks ago
- A Python package for drug discovery by analyzing causal paths on multiscale networks☆26Updated 7 months ago