cansyl / CROssBARLinks
Comprehensive Resource of Biomedical Relations with Deep Learning Applications and Knowledge Graph Representations
☆32Updated 2 years ago
Alternatives and similar repositories for CROssBAR
Users that are interested in CROssBAR are comparing it to the libraries listed below
Sorting:
- A Python package for drug discovery by analyzing causal paths on multiscale networks☆28Updated last year
- Multi-Channel Deep Chemogenomic Modeling of Receptor-Ligand Binding Affinity Prediction for Drug Discovery☆28Updated 4 years ago
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.☆65Updated last month
- StarGazer is a tool designed for rapidly assessing drug repositioning opportunities. It combines multi-source, multi-omics data with a no…☆35Updated 2 years ago
- PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…☆54Updated 4 months ago
- ☆19Updated last year
- Code to accompany the "Implications of Topological Imbalance for Representation Learning on Biomedical Knowledge Graphs" (Briefings in B…☆19Updated last week
- code for Gogleva et al manuscript☆46Updated 3 years ago
- Source code and data repository for "Ensembles of knowledge graph embedding models improve predictions for drug discovery"☆20Updated last year
- Method for drug repurposing from knowledge graphs and literature☆36Updated 5 years ago
- Open source code for AlphaFold to extract protein embeddings☆27Updated 4 years ago
- HoTS: Sequence-based prediction of binding regions and drug-target interactions.☆28Updated 3 years ago
- A deep learning framework for high-throughput mechanism-driven phenotype screening☆52Updated 4 years ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆70Updated last year
- TargetDB is a tool to quickly querry multiple publicly available databases and provide an integrated view of the information available ab…☆32Updated last year
- Learning with uncertainty for biological discovery and design☆34Updated 2 years ago
- Source code for "A novel methodology on distributed representations of proteins using their interacting ligands"☆28Updated 5 years ago
- Repository of Jupyter Notebooks on Colab, Binder and Huggingface for Bio, Chemistry and Physics☆13Updated 2 years ago
- Code to build the Target Central Resource Database (TCRD).☆11Updated 4 years ago
- NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.☆34Updated last year
- TransDTI: Transformer-based language models for estimating DTIs and building a drug-recommendation workflow☆13Updated 3 years ago
- PyTorch implementation of Parapred (Liberis et al., 2018) with Paratyping (Richardson et al., 2021)☆20Updated 2 years ago
- Protein Graph in Python for MetaPath-ML and more.☆20Updated 6 months ago
- Library of Integrated Cellular Signatures L1000☆31Updated 3 years ago
- SPECTRA: Spectral framework for evaluation of biomedical AI models☆41Updated 9 months ago
- Predicting mechanism of action of novelcompounds using compound structure andtranscriptomic signature co-embedding☆14Updated 2 years ago
- This repository provides an implementation of the DTiGEMSplus tool, a network-based method for computational Drug-Target Interaction pred…☆27Updated 4 years ago
- DeepGO with Fuzzy DL☆31Updated 3 years ago
- Data-driven chemical-induced toxicity prediction by machine learning using chemical and bioactivity data☆10Updated 8 years ago
- ☆32Updated 3 months ago