cansyl / CROssBARLinks
Comprehensive Resource of Biomedical Relations with Deep Learning Applications and Knowledge Graph Representations
☆30Updated last year
Alternatives and similar repositories for CROssBAR
Users that are interested in CROssBAR are comparing it to the libraries listed below
Sorting:
- A Python package for drug discovery by analyzing causal paths on multiscale networks☆27Updated last year
- Source code and data repository for "Ensembles of knowledge graph embedding models improve predictions for drug discovery"☆20Updated last year
- Code to accompany the "Implications of Topological Imbalance for Representation Learning on Biomedical Knowledge Graphs" (Briefings in B…☆18Updated last month
- ☆17Updated 11 months ago
- Multi-Channel Deep Chemogenomic Modeling of Receptor-Ligand Binding Affinity Prediction for Drug Discovery☆28Updated 4 years ago
- This repository provides an implementation of the DTiGEMSplus tool, a network-based method for computational Drug-Target Interaction pred…☆27Updated 3 years ago
- StarGazer is a tool designed for rapidly assessing drug repositioning opportunities. It combines multi-source, multi-omics data with a no…☆35Updated 2 years ago
- code for Gogleva et al manuscript☆45Updated 2 years ago
- Data-driven chemical-induced toxicity prediction by machine learning using chemical and bioactivity data☆10Updated 8 years ago
- HoTS: Sequence-based prediction of binding regions and drug-target interactions.☆26Updated 2 years ago
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.☆65Updated 3 months ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆32Updated 8 months ago
- PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…☆52Updated 3 weeks ago
- A deep learning framework for high-throughput mechanism-driven phenotype screening☆50Updated 4 years ago
- Independent evaluation set construction for trustworthy ML models in biochemistry☆17Updated last week
- Learning with uncertainty for biological discovery and design☆34Updated 2 years ago
- The Clinical Trials Knowledge Graph☆59Updated 2 years ago
- ProtFeat is protein feature extraction tool that utilizes POSSUM and iFeature.☆20Updated 11 months ago
- Code to build the Target Central Resource Database (TCRD).☆11Updated 4 years ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆70Updated last year
- Open source code for AlphaFold to extract protein embeddings☆27Updated 4 years ago
- Code to accompany the "Understanding the Performance of Knowledge Graph Embeddings in Drug Discovery" manuscript (Artificial Intelligence…☆34Updated last month
- TargetDB is a tool to quickly querry multiple publicly available databases and provide an integrated view of the information available ab…☆32Updated last year
- Source code for "A novel methodology on distributed representations of proteins using their interacting ligands"☆28Updated 5 years ago
- Code for reproducing results of "Unsupervised embeddings is all you need for protein function prediction"☆40Updated 2 years ago
- DeepGO with Fuzzy DL☆31Updated 2 years ago
- Method for drug repurposing from knowledge graphs and literature☆35Updated 5 years ago
- A high-quality hand-curated logD7.4 dataset of 1,130 compounds☆20Updated 7 years ago
- Public version of the AIDD consortium code base☆10Updated 5 months ago
- Paratope Prediction using Deep Learning☆60Updated 2 years ago