department-of-veterans-affairs / Leo
The Leo framework - The VINCI-developed Natural Language Processing(NLP) infrastructure using UIMA.
☆23Updated last year
Alternatives and similar repositories for Leo:
Users that are interested in Leo are comparing it to the libraries listed below
- ☆7Updated 3 years ago
- The goal of the current application is to extract Concept-Value pairs for metrics measured during an echocardiogram study. The input is a…☆17Updated last year
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆32Updated last year
- CDM conversion of MIMIC dataset.☆16Updated 8 years ago
- Classes for ClinicalTrials.gov related projects☆47Updated 5 years ago
- An R package for evaluating phenotype algorithms.☆17Updated 5 months ago
- ETUDE (Evaluation Tool for Unstructured Data and Extractions) is a Python-based tool that provides consistent evaluation options across a…☆12Updated 2 years ago
- Provides backbone infrastructure elements for OHNLP toolsets.☆14Updated 3 months ago
- [in development]☆37Updated 3 years ago
- Health NLP Examples☆88Updated 6 years ago
- Web application for distributing and browsing the Standardized Vocabularies for all instances of an OMOP CDM☆60Updated 2 weeks ago
- ☆98Updated last year
- Repository for managing python tools that model standoff annotations for i2b2 2014 challenge☆14Updated 9 years ago
- Basic Python 3 tools to interact with UMLS lexica☆123Updated 6 years ago
- Usagi is an application to help create mappings between coding systems and the Vocabulary standard concepts.☆94Updated 10 months ago
- The repository for code and documentation produced by the N3C Phenotype and Data Acquisition workstream☆62Updated last year
- Source code used to develop the OHDSI knowledge base of sources with information relevant for assessing assocations between drugs and hea…☆55Updated 6 years ago
- An NLP framework for clinical phenotyping. Docker | Python | Solr | OMOP. http://claritynlp.readthedocs.io/en/latest/☆107Updated last year
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆41Updated 4 years ago
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆65Updated 8 months ago
- Master Documentation Repository for OHNLP Projects Related to Coronavirus Disease 2019☆21Updated 2 years ago
- Mapping the MIMIC-III database to the OMOP schema☆132Updated last year
- NLP2FHIR: A FHIR-based Clinical Data Normalization Pipeline and Its Applications☆60Updated 2 years ago
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆64Updated 4 months ago
- ☆23Updated 5 years ago
- Miscellaneous tools for clinical ML☆29Updated 7 years ago
- A simple REST-server around ctakes clinical pipeline.☆30Updated 8 years ago
- Clinical Language Annotation Modeling and Processing toolkit☆16Updated 8 years ago
- ☆14Updated 4 months ago
- Data Ingestion and Harmonization☆43Updated 2 years ago