ebegoli / SynthNotes
A generator of synthetic psychiatric notes.
☆16Updated 4 years ago
Related projects: ⓘ
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆32Updated 8 months ago
- NLP2FHIR: A FHIR-based Clinical Data Normalization Pipeline and Its Applications☆59Updated 2 years ago
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆83Updated 11 months ago
- [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…☆62Updated last month
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆88Updated last year
- ☆11Updated 3 months ago
- Web application for distributing and browsing the Standardized Vocabularies for all instances of an OMOP CDM☆57Updated this week
- Open source clinical text de-identification☆107Updated last month
- Provides backbone infrastructure elements for OHNLP toolsets.☆14Updated 10 months ago
- Public release of the DeepPhe analytic software☆30Updated last year
- Python package for managing OHDSI clinical data models. Includes support for LLM based plain text queries!☆36Updated last week
- ☆23Updated 6 years ago
- Training materials for Vocabulary & CDM Tutorial.☆20Updated 5 years ago
- clinical free text de-identification software☆41Updated 5 years ago
- MedTagger is a light weight clinical NLP system built upon Apache UIMA.☆61Updated 2 weeks ago
- Master Documentation Repository for OHNLP Projects Related to Coronavirus Disease 2019☆21Updated last year
- Repository for OMOP CDM conventions as defined by THEMIS. These can be reference lists of concepts, pieces of standardized code for data …☆27Updated this week
- Data Ingestion and Harmonization☆41Updated last year
- Usagi is an application to help create mappings between coding systems and the Vocabulary standard concepts.☆91Updated 3 months ago
- Mapping the MIMIC-III database to the OMOP schema☆125Updated 6 months ago
- [under development] Tools for ETL into OMOP CDM and deployment of OHDSI toolstack☆32Updated 10 months ago
- Leaf Clinical Data Explorer☆88Updated last month
- [Under development] Assessment of Pre-trained Observational Large Language-models in OHDSI (APOLLO)☆11Updated 3 months ago
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆34Updated 4 years ago
- A Serverless Text Annotation Tool for Corpus Development☆50Updated 8 months ago
- A near real-time named-entity recognizer☆58Updated 3 months ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆69Updated last week
- ☆23Updated 4 years ago
- Represent SNOMED CT in a relational database☆82Updated last year
- [under development] ETL materials to support proposal for CDM enhancements for clinical trial data☆20Updated 3 years ago