Alternatives and similar repositories for gromacs-plumed-docker

Users that are interested in gromacs-plumed-docker are comparing it to the libraries listed below

• guyuehuo / opendock
  ☆53Updated last month
• JoaoRodrigues / interfacea
  An open-source library for the analysis of protein interactions.
  ☆33Updated 4 years ago
• pamellaccar / gromacs_with_packmol
  A fast and simple Molecular Dynamics tutorial using GROMACS and PACKMOL.
  ☆37Updated 2 years ago
• tubiana / protocolGromacs
  Automatic gromacs protocol from preparation to production with ligand parametrization through
  ☆78Updated 9 months ago
• dwhswenson / contact_map
  Contact map analysis for biomolecules; based on MDTraj
  ☆48Updated last year
• PhilippJunk / homelette
  A unified and modular interface to homology modelling software
  ☆11Updated 2 years ago
• Boehringer-Ingelheim / pyPept
  pyPept: a python library to generate atomistic 2D and 3D representations of peptides
  ☆85Updated 2 months ago
• HITS-MBM / conan
  Analysis of contacts in molecular dynamics trajectories
  ☆45Updated 6 years ago
• dkoes / show_contacts
  PyMOL Plugin for displaying polar contacts
  ☆18Updated 6 years ago
• haddocking / haddock-tools
  Set of useful HADDOCK utility scripts
  ☆57Updated 4 months ago
• pstansfeld / MemProtMD
  ☆47Updated 2 months ago
• mqcomplab / bblean
  BitBIRCH-Lean, a memory-efficient implementation of BitBIRCH designed for high-throughput clustering of huge molecular libraries
  ☆97Updated this week
• lcbc-epfl / metal-site-prediction
  ☆43Updated 2 years ago
• pritampanda15 / Molecular-Dynamics
  Self explained tutorial for molecular dynamics simulation using gromacs
  ☆41Updated last year
• Jnelen / DiffDockHPC
  DiffDock implementation that adds support for HPC execution using Slurm and Singularity
  ☆26Updated 7 months ago
• volkamerlab / kissim
  Subpocket-based fingerprint for kinase pocket comparison
  ☆33Updated 2 years ago
• labstructbioinf / localpdb
  Python package to manage protein structures and their annotations
  ☆45Updated last year
• patrickbryant1 / MoLPC
  Modelling of Large Protein Complexes
  ☆39Updated 5 months ago
• cmbi / dssp
  The DSSP building software
  ☆48Updated 2 years ago
• silicogenesis / protkit
  A Unified Approach to Protein Engineering
  ☆41Updated last year
• rochoa85 / PepFun
  Bioinformatics and Cheminformatics protocols for peptide analysis
  ☆44Updated 3 years ago
• Protein-Engineering-Framework / PyPEF
  PyPEF – Pythonic Protein Engineering Framework
  ☆25Updated 3 months ago
• Faezov / PDBrenum
  ☆30Updated 8 months ago
• srijitseal / hermessmiles
  A tool to compare two CSV files of SMILES strings, find overlapping compounds by InChIKey prefix, and generate an HTML visualization of …
  ☆16Updated 8 months ago
• brianjimenez / pydock_tutorial
  PyDock Tutorial
  ☆35Updated 7 years ago
• tlemmin / glycosylator
  Framework for the rapid modeling glycans and glycoproteins.
  ☆31Updated 2 years ago
• haddocking / fcc
  Fraction of Common Contacts Clustering Algorithm for Protein Structures
  ☆27Updated 4 years ago
• sarisabban / RosettaDesign
  RosettaDesign using PyRosetta
  ☆33Updated 6 years ago
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆70Updated last year
• ullahsamee / PyMOLfold
  Plugin for folding sequences directly in PyMOL
  ☆27Updated 5 months ago