Alternatives and similar repositories for Emergent-phases:

Users that are interested in Emergent-phases are comparing it to the libraries listed below

• zhouhj1994 / LinDA
  ☆36Updated last year
• biobakery / SparseDOSSA2
  ☆13Updated 5 months ago
• jaeyunsung / GMHI_2020
  Scripts for reproducing results shown in Gupta VK et al. "A Predictive Index for Health Status using Species-level Gut Microbiome Profili…
  ☆34Updated 4 years ago
• yijuanhu / LDM-Archive
  Linear Decomposition Model
  ☆24Updated last year
• YuLab-SMU / MMINP
  Microbe-Metabolite INteractions-based metabolic profiles Predictor
  ☆15Updated 2 years ago
• YuLab-SMU / aplot
  Decorate a plot with associated information
  ☆104Updated 2 months ago
• UBod / msa
  R package for multiple sequence alignment
  ☆19Updated last month
• ying14 / yingtools2
  Ying's tools for analysis, with particular focus on microbiome data
  ☆41Updated last month
• metaOmics / metaOmics
  Shiny GUI application for genomics meta-analysis
  ☆22Updated 4 years ago
• shimo-lab / pvclust
  An R package for hierarchical clustering with p-values
  ☆46Updated 5 years ago
• Asa12138 / pcutils
  Useful Utilities for Statistics and Visualization.
  ☆22Updated last month
• microbiota / Zhang2019NBT
  Scripts for stat and plot figures in rice microbiome paper
  ☆19Updated 5 years ago
• GuangchuangYu / cv
  Guangchuang Yu's CV
  ☆44Updated 4 months ago
• vdblab / FLORAL
  Fit LOg-RAtio Lasso regression for compositional covariates
  ☆13Updated 3 weeks ago
• ruanzhepu / superCC
  A newly developed metabolic modeling pipeline, SuperCC, which could simulate the performances of different microbiomes.
  ☆21Updated last year
• WandeRum / multiROC
  Calculating and Visualizing ROC and PR Curves Across Multi-Class Classifications
  ☆33Updated 4 years ago
• blekhmanlab / host_gene_microbiome_interactions
  Analysis framework for integrating gut microbiome and host gene expression data
  ☆32Updated 3 years ago
• shihuang047 / age-prediction
  ☆20Updated 4 years ago
• YuLab-SMU / ggtreeExtra
  Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”
  ☆92Updated 3 weeks ago
• hannet91 / ggcor
  Extended tools for correlation analysis and visualization.
  ☆43Updated 5 years ago
• nhanhocu / metamicrobiomeR
  An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…
  ☆33Updated 4 years ago
• mcalgaro93 / sc2meta
  Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…
  ☆10Updated 4 years ago
• xiaolw95 / NetMoss
  ☆14Updated 3 years ago
• ggloor / ALDEx_bioc
  ALDEx_bioc is the working directory for updating bioconductor
  ☆28Updated last week
• XiaoLuo-boy / ggheatmap
  ggplot2 version of heatmap
  ☆87Updated 2 years ago
• PriceLab / ShannonMets
  ** Blood metabolome predicts gut microbiome α-diversity in humans**
  ☆24Updated 5 years ago
• Huber-group-EMBL / biomaRt
  R package providing query functionality to BioMart instances like Ensembl
  ☆43Updated last month
• FrederickHuangLin / ANCOM-BC-Code-Archive
  Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check …
  ☆30Updated 4 years ago
• CristianCastiglione / sgdGMF
  Efficient stochastic gradient descent algorithms for the estimation of generalized matrix factorization models in R.
  ☆11Updated 2 months ago
• ELTEbioinformatics / mulea
  mulea - an R package for enrichment analysis using various ontologies and empirical false discovery rate
  ☆29Updated 4 months ago