Enzyme Activity Prediction of Sequence Variants onNovel Substrates using Improved Substrate Encodings and Convolutional Pooling
☆18Nov 28, 2022Updated 3 years ago
Alternatives and similar repositories for Compound_Protein_Interac_Pred
Users that are interested in Compound_Protein_Interac_Pred are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A deep-learning-based multiple toolkits (DeTool) approach that uses the inputs of enzymes and substrates for biocatalystic tasks.☆13Nov 24, 2023Updated 2 years ago
- A deep learning-based predictor of enzyme optimal pH☆10Jun 25, 2025Updated 10 months ago
- ☆17Jun 15, 2022Updated 3 years ago
- Enzyme datasets used to benchmark enzyme-substrate promiscuity models☆44Jun 28, 2021Updated 4 years ago
- Ligand-binding site classification with deep graph neural networks.☆10Sep 24, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Structure-Informed Protein Language Model☆38Feb 15, 2024Updated 2 years ago
- A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …☆27Aug 7, 2020Updated 5 years ago
- Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic mo…☆193Jul 4, 2023Updated 2 years ago
- SUPBUB is a tool that, in linear time, finds out superbubbles(special graph-structures) in a directed graph.☆12Sep 19, 2019Updated 6 years ago
- Reaction-Conditioned Virtual Screening of Enzymes☆43Jun 11, 2025Updated 11 months ago
- DeepRMSD+Vina is a computational framework that integrates ligand binding pose optimization and screening.☆43Jan 22, 2024Updated 2 years ago
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆15May 24, 2023Updated 2 years ago
- A compilation of deep learning methods for protein design☆96Nov 5, 2022Updated 3 years ago
- Protein discovery tool for mining in the Alphafold database based on the position of few amino acids.☆32May 11, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Use Python to automatically set fan speed for Lenovo HR650X Server☆13Dec 7, 2023Updated 2 years ago
- Repository containing scripts and analysis for ML-Guided Acyl-ACP Reductase Engineering paper☆11Nov 21, 2023Updated 2 years ago
- Graph neural network for generating novel amino acid sequences that fold into proteins with predetermined topologies.☆60Mar 24, 2021Updated 5 years ago
- ☆24Sep 21, 2023Updated 2 years ago
- ☆20Jun 20, 2022Updated 3 years ago
- ☆20Mar 29, 2022Updated 4 years ago
- A generalized enzyme kinetics parameter prediction model.☆85Oct 2, 2025Updated 7 months ago
- Lecture notes for CSC2421☆10Jan 8, 2023Updated 3 years ago
- LatentDE: Latent-based Directed Evolution for Protein Sequence Design☆38Apr 2, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- This is the repo for CROssBARv2 Knowledge Graph data. CROssBARv2 is a heterogeneous general-purpose biomedical KG-based system.☆13Feb 4, 2026Updated 3 months ago
- Knowledge-based Identification of Pathway Enzymes (KIPEs) performs an automatic annotation of the flavonoid biosynthesis steps in a new t…☆17Feb 12, 2026Updated 3 months ago
- An Arduino based Fan proxy to provide more control over 15th Generation Dell PowerEdge Servers☆16May 6, 2025Updated last year
- ☆98Oct 14, 2025Updated 7 months ago
- Directed evolution of proteins in sequence space with gradients☆95Oct 18, 2025Updated 7 months ago
- Gaussian process models for optimizing channelrhodopsin properties.☆13May 30, 2020Updated 5 years ago
- CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes☆47Jun 17, 2025Updated 11 months ago
- The BioJS MSA viewer wrapped into an R package☆12Sep 27, 2016Updated 9 years ago
- Template for creating a BioCypher-driven knowledge graph☆13Jan 15, 2026Updated 4 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments☆13Mar 25, 2026Updated last month
- Original galgame engine for windows 10☆17Nov 13, 2015Updated 10 years ago
- HAC-Net: A Hybrid Attention-Based Convolutional Neural Network for Highly Accurate Protein-Ligand Binding Affinity Prediction☆61Dec 9, 2024Updated last year
- ☆17Apr 9, 2026Updated last month
- Official implementation of "Learning the language of protein structures"☆41Mar 18, 2026Updated 2 months ago
- Prediction of protein melting temperatures directly from sequences☆12Apr 16, 2024Updated 2 years ago
- A Python parser for the BRENDA database☆33Sep 15, 2023Updated 2 years ago