Alternatives and similar repositories for DeepProfiler-handbook

Users that are interested in DeepProfiler-handbook are comparing it to the libraries listed below

• recursionpharma / maes_microscopy
  Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.
  ☆59Updated 6 months ago
• biocompibens / phenexplain
  Phenexplain source code
  ☆12Updated last year
• broadinstitute / cellpainting-gallery
  Cell Painting Gallery
  ☆90Updated 2 weeks ago
• carpenter-singh-lab / 2023_Arevalo_NatComm_BatchCorrection
  Evaluating batch correction methods for image-based cell profiling
  ☆14Updated 5 months ago
• recursionpharma / EFAAR_benchmarking
  External repo for the EFAAR benchmarking paper
  ☆19Updated this week
• jump-cellpainting / JUMP-Target
  Lists and 384-well plate maps of compounds and genetic perturbations designed to assess connectivity in profiling assays
  ☆21Updated 5 months ago
• theislab / IMPA
  ☆13Updated 4 months ago
• jump-cellpainting / 2024_Chandrasekaran_NatureMethods
  ☆62Updated 3 months ago
• ml-jku / cloome
  ☆38Updated 7 months ago
• broadinstitute / lincs-cell-painting
  Processed Cell Painting Data for the LINCS Drug Repurposing Project
  ☆28Updated 2 years ago
• crosszamirski / Label-free-prediction-of-Cell-Painting-from-brightfield-images
  Label Free Prediction of Cell Painting from Brightfield Images
  ☆30Updated 2 years ago
• Bayer-Group / CPMolGAN
  ☆8Updated 2 years ago
• royerlab / cytoself
  Self-supervised models for encoding protein localization patterns from microscopy images
  ☆76Updated 8 months ago
• CaicedoLab / 2023_Moshkov_NatComm
  Predicting assays Using Morphological Analysis
  ☆14Updated last year
• cytomining / CytoTable
  Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.
  ☆10Updated last week
• jump-cellpainting / datasets
  Images and other data from the JUMP Cell Painting Consortium
  ☆169Updated 3 months ago
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆48Updated 4 months ago
• Novartis / ChemBioMultimodalAutoencoders
  a package for streamlined multidomain data integration and translation based on cross-modal autoencoders architectures
  ☆29Updated last year
• cytomining / DeepProfiler
  Morphological profiling using deep learning
  ☆117Updated 7 months ago
• cytomining / pycytominer
  Python package for processing image-based profiling data
  ☆117Updated this week
• krishnanlab / obnb
  A Python toolkit for setting up benchmarking dataset using biomedical networks
  ☆22Updated last week
• crosszamirski / WS-DINO
  WS-DINO: a novel framework to use weak label information in a self-supervised setting to learn phenotypic representations from high-conte…
  ☆21Updated 2 years ago
• JacobHanimann / scDINO
  Self-Supervised Vision Transformers for multiplexed imaging datasets
  ☆51Updated 11 months ago
• bioimage-io / bioimageio-chatbot
  Your Personal Assistant in Computational Bioimaging.
  ☆41Updated 2 months ago
• gevaertlab / RNA-GAN
  Synthetic whole-slide imaging tile generation with gene expression profiles infused deep generative models - Cell Reports Methods
  ☆16Updated last year
• carpenterlab / 2016_Bray_NatureProtocols
  Supporting data files, documentation, and updated tips for the Cell Painting protocol
  ☆21Updated 3 years ago
• mahmoodlab / MAPS
  Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
  ☆56Updated last year
• bowang-lab / scFormer
  ☆19Updated 2 years ago
• broadinstitute / cell-health
  Predicting Cell Health with Morphological Profiles
  ☆37Updated 3 years ago
• deepimagej / pydeepimagej
  Python package to export tensorflow models as DeepImageJ bundled models
  ☆17Updated 2 years ago