cx0 / geneformer-finetune
☆12Updated last year
Related projects ⓘ
Alternatives and complementary repositories for geneformer-finetune
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆109Updated 2 months ago
- Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data☆48Updated 4 months ago
- ☆28Updated last year
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆31Updated this week
- Single-cell ATAC-seq analysis via Latent feature Extraction☆100Updated last year
- ☆37Updated 11 months ago
- ☆40Updated 10 months ago
- Additional code and analysis from the single-cell integration benchmarking project☆55Updated last year
- Predict RNA velocity through deep learning☆64Updated 11 months ago
- Models and datasets for perturbational single-cell omics☆143Updated 2 years ago
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.☆50Updated 5 months ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆121Updated last year
- PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.☆26Updated 10 months ago
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆86Updated 2 weeks ago
- ☆47Updated 9 months ago
- Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.☆51Updated 3 months ago
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆39Updated last year
- Transformer for One-Stop Interpretable Cell-type Annotation☆131Updated 8 months ago
- Single cell omics biology annotations☆48Updated 2 months ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆19Updated last month
- Accelerated, Python-only, single-cell integration benchmarking metrics☆49Updated this week
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆109Updated this week
- ☆88Updated 3 years ago
- ☆9Updated 8 months ago
- ☆79Updated last week
- Computational Optimization of DNA Activity (CODA)☆41Updated 2 months ago
- Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.☆96Updated 9 months ago
- Single-Cell (Perturbation) Model Library☆22Updated 2 weeks ago
- Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets☆34Updated 7 months ago
- Create cell sentences from sequencing data☆21Updated 3 months ago