☆29May 19, 2026Updated last month
Alternatives and similar repositories for SARS-CoV-2_Genomic_Surveillance
Users that are interested in SARS-CoV-2_Genomic_Surveillance are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆21Apr 2, 2025Updated last year
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆29Mar 10, 2026Updated 3 months ago
- Covid-19 epidemiology - data and analysis☆11Dec 7, 2023Updated 2 years ago
- A repository to store COVID-19 variant nowcasts collected as a modeling hub.☆21Updated this week
- UPHL's Reference Free Pipeline☆29Jul 1, 2026Updated last week
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- The R package 'phylosamp' implements novel tools that estimate the probability of transmission between two cases given phylogenetic linka…☆13May 23, 2023Updated 3 years ago
- Consensus sequences for each Pango lineage☆23Jun 27, 2025Updated last year
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated last month
- SARS-CoV-2 genomics☆16Jun 20, 2025Updated last year
- Tools for evolutionary forecasting☆14Jun 19, 2026Updated 2 weeks ago
- Software for the Tree-Based Scan Statistic☆17Jun 17, 2026Updated 3 weeks ago
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆40Feb 20, 2026Updated 4 months ago
- A Public Health Scotland R shiny app for surveillance of COVID-19 and respiratory illnesses in Scotland☆10Jul 1, 2026Updated last week
- Bacterial surveillance pipeline.☆28Jul 2, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Data associated with the timeline of events during the 2024 H5N1 outbreak in the United States☆27Jul 17, 2024Updated last year
- LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigations☆26Aug 26, 2024Updated last year
- Tools for basic signal processing in epidemiology☆12Jul 2, 2026Updated last week
- Rnssp R Markdown templates are custom-built, parameterized R Markdown templates with seamless integration to the Rnssp R package to enhan…☆14Jun 8, 2026Updated last month
- ☆39Jul 8, 2024Updated 2 years ago
- Utility to alias and dealias pango lineages☆23Dec 18, 2023Updated 2 years ago
- Static website for the PH4AGE alliance☆13Oct 27, 2023Updated 2 years ago
- Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States☆27Aug 14, 2025Updated 10 months ago
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆26Updated this week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A Signature R package for the National Syndromic Surveillance Program (NSSP) at the Centers for Disease Control and Prevention (CDC). A c…☆46Nov 20, 2025Updated 7 months ago
- emm Automatic Isolate Labeller☆15Mar 25, 2025Updated last year
- Nextstrain build for dengue virus☆14Updated this week
- Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZH☆19Dec 22, 2021Updated 4 years ago
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆12Dec 2, 2024Updated last year
- ☆20Apr 9, 2021Updated 5 years ago
- ☆62Jul 1, 2026Updated last week
- Local Lineage and Monophyly Assessment☆16Aug 5, 2021Updated 4 years ago
- Nextstrain build for mpox virus☆50Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Bayesian model for time-series count data with weekend effects and a lagged reporting process☆10Mar 7, 2022Updated 4 years ago
- Spatio-temporal NHGIS Crosswalks☆12Nov 21, 2025Updated 7 months ago
- An R package to help assess the sensitivity of a Bayesian model (fitted with Stan) to the specification of its likelihood and priors☆11May 29, 2026Updated last month
- The purpose of SaviR is to collect the functions needed to access and prepare various COVID data sources.☆20Apr 24, 2026Updated 2 months ago
- Plasmid and antimicrobial resistance pipeline☆16Apr 30, 2026Updated 2 months ago
- ☆17Feb 23, 2021Updated 5 years ago
- A curated database of completed assemblies with taxonomy IDs☆53Jun 7, 2026Updated last month