β29May 19, 2026Updated 3 months ago
Alternatives and similar repositories for SARS-CoV-2_Genomic_Surveillance
Users that are interested in SARS-CoV-2_Genomic_Surveillance are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 𧬠π» TOSTADAS β Toolkit for Open Sequence Triage, Annotation and DAtabase Submissionβ29Updated this week
- The R package 'phylosamp' implements novel tools that estimate the probability of transmission between two cases given phylogenetic linkaβ¦β14May 23, 2023Updated 3 years ago
- Covid-19 epidemiology - data and analysisβ11Dec 7, 2023Updated 2 years ago
- β21Apr 2, 2025Updated last year
- A repository to store COVID-19 variant nowcasts collected as a modeling hub.β21Updated this week
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- UPHL's Reference Free Pipelineβ29Updated this week
- Consensus sequences for each Pango lineageβ24Jun 27, 2025Updated last year
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.β10Jun 9, 2026Updated 2 months ago
- A Public Health Scotland R shiny app for surveillance of COVID-19 and respiratory illnesses in Scotlandβ11Updated this week
- Tools for evolutionary forecastingβ14Jun 19, 2026Updated 2 months ago
- Bacterial surveillance pipeline.β28Updated this week
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health conβ¦β67Updated this week
- Software for the Tree-Based Scan Statisticβ17Updated this week
- Rnssp R Markdown templates are custom-built, parameterized R Markdown templates with seamless integration to the Rnssp R package to enhanβ¦β14Jul 24, 2026Updated last month
- Simple, predictable pricing with DigitalOcean hosting β’ AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Estimate growth rate advantage of SARS-CoV2 variants of concern based on international genomic surveillance data and multinomial spline fβ¦β25Apr 24, 2023Updated 3 years ago
- Scripts and reference files to type Group A Streptococcusβ11Aug 31, 2026Updated last week
- Data associated with the timeline of events during the 2024 H5N1 outbreak in the United Statesβ27Jul 17, 2024Updated 2 years ago
- Utility to alias and dealias pango lineagesβ23Dec 18, 2023Updated 2 years ago
- Tools for basic signal processing in epidemiologyβ12Aug 20, 2026Updated 2 weeks ago
- LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigationsβ26Aug 26, 2024Updated 2 years ago
- The purpose of SaviR is to collect the functions needed to access and prepare various COVID data sources.β20Apr 24, 2026Updated 4 months ago
- β39Jul 8, 2024Updated 2 years ago
- A Signature R package for the National Syndromic Surveillance Program (NSSP) at the Centers for Disease Control and Prevention (CDC). A cβ¦β47Updated this week
- Managed Kubernetes at scale on DigitalOcean β’ AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Static website for the PH4AGE allianceβ14Oct 27, 2023Updated 2 years ago
- emm Automatic Isolate Labellerβ15Mar 25, 2025Updated last year
- Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United Statesβ27Aug 14, 2025Updated last year
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.β28Updated this week
- Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZHβ19Dec 22, 2021Updated 4 years ago
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only runβ12Dec 2, 2024Updated last year
- β20Apr 9, 2021Updated 5 years ago
- Nextstrain build for mpox virusβ50Aug 27, 2026Updated last week
- Local Lineage and Monophyly Assessmentβ16Aug 5, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Nextstrain build for dengue virusβ17Aug 3, 2026Updated last month
- β64Updated this week
- β23Jul 22, 2026Updated last month
- β17Feb 23, 2021Updated 5 years ago
- Spatio-temporal NHGIS Crosswalksβ12Nov 21, 2025Updated 9 months ago
- A Bayesian model for time-series count data with weekend effects and a lagged reporting processβ10Mar 7, 2022Updated 4 years ago
- β10Sep 30, 2025Updated 11 months ago