CDCgov / SARS-CoV-2_Genomic_SurveillanceLinks
☆27Updated 4 months ago
Alternatives and similar repositories for SARS-CoV-2_Genomic_Surveillance
Users that are interested in SARS-CoV-2_Genomic_Surveillance are comparing it to the libraries listed below
Sorting:
- Disease outbreak reconstruction from epidemiological and genetic data☆34Updated last year
- R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.☆21Updated 2 years ago
- Estimate growth rate advantage of SARS-CoV2 variants of concern based on international genomic surveillance data and multinomial spline f…☆25Updated 2 years ago
- Functions to simplify and standardise antimicrobial resistance (AMR) data analysis and to work with microbial and antimicrobial propertie…☆103Updated last month
- Metagenomics calibration R package☆20Updated 3 years ago
- Tools for evolutionary forecasting☆14Updated 2 months ago
- An Amazing Shiny App☆17Updated 4 years ago
- ☆19Updated 3 weeks ago
- Tool for visualising viral lineages in space and time. As seen on covid19.sanger.ac.uk and covglobe.org.☆10Updated 3 years ago
- Analysis of global migration patterns of seasonal influenza viruses☆22Updated 6 years ago
- R tools for posterior analyses using BEAST☆20Updated 6 years ago
- This repo contains the R microshades package, which contains a color blind accessible color palette with 30 unique colors and functions f…☆68Updated last year
- ☆19Updated 7 months ago
- Species richness with high diversity☆67Updated 3 months ago
- Growthcurver is an R package that fits growth curve data to a standard form of the logistic equation common in ecology and evolution whos…☆48Updated 3 years ago
- Estimating time trees from very large phylogenies☆28Updated last year
- SARS-CoV-2 genome data analysis☆10Updated last week
- gcplyr is an R package that facilitates wrangling and analysis of microbial growth curve data☆37Updated 3 months ago
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Updated 3 weeks ago
- Racmacs R package for performing antigenic cartography☆24Updated last year
- A textbook for phylogenetic comparative methods.☆43Updated 6 years ago
- Pathogen evolution, selection and immunity☆45Updated last year
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Updated 2 years ago
- babette is an R package to work with BEAST2☆46Updated 3 weeks ago
- R package to run BEAST2☆11Updated 3 weeks ago
- ☆74Updated last year
- Molecular Epidemiology of Viruses in R☆19Updated 10 years ago
- Source files for online resources of Bioinformatics of Infectious Diseases course☆22Updated 5 years ago
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Updated last year
- An automated pipeline for retrieving orthologous DNA sequences from GenBank in R☆25Updated 3 months ago