CDCgov / SARS-CoV-2_Genomic_Surveillance
☆25Updated last year
Related projects ⓘ
Alternatives and complementary repositories for SARS-CoV-2_Genomic_Surveillance
- Disease outbreak reconstruction from epidemiological and genetic data☆31Updated last month
- R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.☆20Updated last year
- Molecular Epidemiology of Viruses in R☆18Updated 9 years ago
- ☆17Updated 2 weeks ago
- Analysis of global migration patterns of seasonal influenza viruses☆22Updated 5 years ago
- ☆15Updated last month
- R tools for posterior analyses using BEAST☆20Updated 5 years ago
- Reconstruction of transmission trees using genomic data☆60Updated last year
- An Amazing Shiny App☆17Updated 3 years ago
- gcplyr is an R package that facilitates wrangling and analysis of microbial growth curve data☆30Updated 2 months ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3☆13Updated last year
- Tool for visualising viral lineages in space and time. As seen on covid19.sanger.ac.uk and covglobe.org.☆10Updated 2 years ago
- R package for studying environmental rasters and phylogenetic informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al.…☆29Updated 2 weeks ago
- Growthcurver is an R package that fits growth curve data to a standard form of the logistic equation common in ecology and evolution whos…☆44Updated 2 years ago
- Cluster Investigation & Virus Epidemiology Tool☆49Updated last year
- Utilities and distributions for (birth-death) skyline models.☆10Updated 5 years ago
- Epidemiological modeling framework for pathogen population genetics and evolution.☆16Updated last month
- Welcome to the StrainHub Repo - Files and Data - StrainHub Online:☆14Updated 2 years ago
- analysis of phylogenetics and evolution☆53Updated last month
- Scalable relaxed clock phylogenetic dating☆24Updated 7 months ago
- Basic Tools for the Analysis of Disease Outbreaks☆12Updated 5 years ago
- Consensus sequences for U.S. H5N1 clade 2.3.4.4b☆25Updated this week
- Estimate growth rate advantage of SARS-CoV2 variants of concern based on international genomic surveillance data and multinomial spline f…☆25Updated last year
- Data repository for NWSS☆11Updated 10 months ago
- Phylodynamic inference☆18Updated 4 years ago
- Racmacs R package for performing antigenic cartography☆20Updated 4 months ago
- R Package growthrates☆26Updated last year
- Estimating time trees from very large phylogenies☆24Updated 3 months ago
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆27Updated this week
- Global phylogenies of SARS-CoV-2 sequences☆86Updated last year
- Metagenomics calibration R package☆18Updated 2 years ago