β29Jul 9, 2025Updated 10 months ago
Alternatives and similar repositories for SARS-CoV-2_Genomic_Surveillance
Users that are interested in SARS-CoV-2_Genomic_Surveillance are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- β21Apr 2, 2025Updated last year
- 𧬠π» TOSTADAS β Toolkit for Open Sequence Triage, Annotation and DAtabase Submissionβ29Mar 10, 2026Updated last month
- Covid-19 epidemiology - data and analysisβ11Dec 7, 2023Updated 2 years ago
- A repository to store COVID-19 variant nowcasts collected as a modeling hub.β21Updated this week
- UPHL's Reference Free Pipelineβ28Updated this week
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- The R package 'phylosamp' implements novel tools that estimate the probability of transmission between two cases given phylogenetic linkaβ¦β13May 23, 2023Updated 2 years ago
- Consensus sequences for each Pango lineageβ23Jun 27, 2025Updated 10 months ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.β10Feb 27, 2026Updated 2 months ago
- SARS-CoV-2 genomicsβ16Jun 20, 2025Updated 10 months ago
- Tools for evolutionary forecastingβ14Feb 9, 2026Updated 3 months ago
- Software for the Tree-Based Scan Statisticβ15Apr 28, 2026Updated last week
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositoriesβ39Feb 20, 2026Updated 2 months ago
- A Public Health Scotland R shiny app for surveillance of COVID-19 and respiratory illnesses in Scotlandβ10May 1, 2026Updated last week
- Bacterial surveillance pipeline.β27Apr 28, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Data associated with the timeline of events during the 2024 H5N1 outbreak in the United Statesβ26Jul 17, 2024Updated last year
- LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigationsβ26Aug 26, 2024Updated last year
- Tools for basic signal processing in epidemiologyβ12Apr 30, 2026Updated last week
- β40Jul 8, 2024Updated last year
- Rnssp R Markdown templates are custom-built, parameterized R Markdown templates with seamless integration to the Rnssp R package to enhanβ¦β14May 1, 2026Updated last week
- Utility to alias and dealias pango lineagesβ23Dec 18, 2023Updated 2 years ago
- Static website for the PH4AGE allianceβ13Oct 27, 2023Updated 2 years ago
- Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United Statesβ27Aug 14, 2025Updated 8 months ago
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.β24May 2, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A Signature R package for the National Syndromic Surveillance Program (NSSP) at the Centers for Disease Control and Prevention (CDC). A cβ¦β45Nov 20, 2025Updated 5 months ago
- emm Automatic Isolate Labellerβ12Mar 25, 2025Updated last year
- Nextstrain build for dengue virusβ14Apr 20, 2026Updated 2 weeks ago
- Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZHβ19Dec 22, 2021Updated 4 years ago
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only runβ12Dec 2, 2024Updated last year
- β20Apr 9, 2021Updated 5 years ago
- β58Apr 30, 2026Updated last week
- Local Lineage and Monophyly Assessmentβ16Aug 5, 2021Updated 4 years ago
- Nextstrain build for mpox virusβ50Apr 20, 2026Updated 2 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer β’ AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A Bayesian model for time-series count data with weekend effects and a lagged reporting processβ10Mar 7, 2022Updated 4 years ago
- Spatio-temporal NHGIS Crosswalksβ12Nov 21, 2025Updated 5 months ago
- An R package to help assess the sensitivity of a Bayesian model (fitted with Stan) to the specification of its likelihood and priorsβ11Apr 8, 2025Updated last year
- The purpose of SaviR is to collect the functions needed to access and prepare various COVID data sources.β20Apr 24, 2026Updated 2 weeks ago
- Plasmid and antimicrobial resistance pipelineβ16Apr 30, 2026Updated last week
- β17Feb 23, 2021Updated 5 years ago
- A curated database of completed assemblies with taxonomy IDsβ51Mar 21, 2026Updated last month