CDCgov / SARS-CoV-2_Genomic_SurveillanceLinks
☆27Updated last week
Alternatives and similar repositories for SARS-CoV-2_Genomic_Surveillance
Users that are interested in SARS-CoV-2_Genomic_Surveillance are comparing it to the libraries listed below
Sorting:
- Disease outbreak reconstruction from epidemiological and genetic data☆35Updated 9 months ago
- R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.☆20Updated 2 years ago
- Estimate growth rate advantage of SARS-CoV2 variants of concern based on international genomic surveillance data and multinomial spline f…☆25Updated 2 years ago
- ☆19Updated 3 months ago
- R tools for posterior analyses using BEAST☆20Updated 6 years ago
- Metagenomics calibration R package☆20Updated 3 years ago
- An Amazing Shiny App☆17Updated 3 years ago
- Functions to simplify and standardise antimicrobial resistance (AMR) data analysis and to work with microbial and antimicrobial propertie…☆99Updated 3 weeks ago
- Estimating time trees from very large phylogenies☆26Updated 11 months ago
- This repo contains the R microshades package, which contains a color blind accessible color palette with 30 unique colors and functions f…☆68Updated last year
- R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2☆13Updated 2 months ago
- Tools for evolutionary forecasting☆13Updated 2 weeks ago
- SARS-CoV-2 genome data analysis☆10Updated 2 weeks ago
- ☆16Updated 3 months ago
- ☆74Updated last year
- The purpose of SaviR is to collect the functions needed to access and prepare various COVID data sources.☆19Updated 4 months ago
- Tool for visualising viral lineages in space and time. As seen on covid19.sanger.ac.uk and covglobe.org.☆10Updated 2 years ago
- Calculate distances between phylogenetic trees in R☆32Updated last week
- Growthcurver is an R package that fits growth curve data to a standard form of the logistic equation common in ecology and evolution whos…☆47Updated 3 years ago
- Molecular Epidemiology of Viruses in R☆19Updated 9 years ago
- The Visualization Multitool for Molecular Epidemiology and Bioinformatics☆94Updated last week
- Species richness with high diversity☆67Updated 3 months ago
- babette is an R package to work with BEAST2☆46Updated last month
- gcplyr is an R package that facilitates wrangling and analysis of microbial growth curve data☆35Updated 5 months ago
- R Package growthrates☆27Updated last month
- Racmacs R package for performing antigenic cartography☆22Updated last year
- Reconstruction of transmission trees using genomic data☆63Updated last year
- Pathogen evolution, selection and immunity☆45Updated last year
- Welcome to the StrainHub Repo - Files and Data - StrainHub Online:☆17Updated 3 years ago
- A Tidy Tool for Phylogenetic Tree Data Manipulation☆56Updated 11 months ago