Alternatives and similar repositories for whole-brain-fUS:

Users that are interested in whole-brain-fUS are comparing it to the libraries listed below

• Aswendt-Lab / AIDAmri
  Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain
  ☆30Updated last month
• sitiny / mr-to-pct
  MR to CT for TUS acoustic simulations
  ☆23Updated last month
• IBT-FMI / SAMRI
  Small Animal Magnetic Resonance Imaging via Python.
  ☆43Updated last year
• cogilab / AMaSiNe
  Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…
  ☆14Updated 2 years ago
• brainglobe / slicereg
  A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
  ☆37Updated last year
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆53Updated 4 years ago
• cuntzlab / treestoolbox
  TREES toolbox
  ☆27Updated 6 months ago
• nipraxis / textbook
  Repository for Nipraxis course textbook
  ☆14Updated last year
• CoBrALab / RABIES
  fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/
  ☆39Updated 2 weeks ago
• HumanBrainED / NHP-BrainExtraction
  ☆35Updated 3 years ago
• CoBrALab / optimized_antsMultivariateTemplateConstruction
  A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support
  ☆25Updated last week
• VisionandCognition / NHP-Freesurfer
  Procedure to create monkey brain surfaces and project results to it
  ☆11Updated last month
• wildrootlab / SHARCQ
  Tools to register histological section images and cell count locations to mouse brain atlas
  ☆25Updated 2 years ago
• neurabenn / precon_all
  precon_all surface pipline
  ☆20Updated last year
• ncsl / seek
  (Stereotatic ElectroEncephalography Kit) Run reconstruction, co-registration, electrode localization and surface/atlas rendering for iEEG…
  ☆19Updated 3 years ago
• ntustison / ANTsXMouseBrainMapping
  The ANTsX Ecosystem for Mapping the Mouse Brain
  ☆11Updated last month
• Donders-Institute / PRESTUS
  PREprocessing & Simulations for Transcranial Ultrasound Stimulation package
  ☆16Updated last week
• nmpowell / mousemorph
  Tools for MRI mouse brain morphometry
  ☆31Updated 8 years ago
• phflot / flow_registration
  Flow-Registration toolbox for 2P motion compensation
  ☆23Updated 8 months ago
• 3Tissue / MRtrix3Tissue
  MRtrix3Tissue adds capabilities for 3-Tissue CSD modelling and analysis to a complete version of MRtrix3.
  ☆11Updated 11 months ago
• SteenMoeller / NORDIC_Raw
  Matlab code for performing image reconstruction in MRI and performing the NORDIC denoising
  ☆59Updated 5 months ago
• hMRI-group / hMRI-toolbox
  A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)
  ☆63Updated last week
• openlists / SpikeResources
  An open list of tools & resources for 'spikes': recordings of single-unit neural activity (action potentials).
  ☆26Updated 2 years ago
• zhoupc / OASIS_matlab
  ☆35Updated 3 years ago
• pGarciaS / PREEMACS
  PREEMACS. pipeline for PREprocessing and Extraction of the MACaque brain Surface
  ☆16Updated 10 months ago
• BrkRaw / brkraw
  BrkRaw: A comprehensive tool to access raw Bruker Biospin MRI data
  ☆47Updated 9 months ago
• kwagstyl / surface_tools
  Tools for mesh surface-based operations
  ☆35Updated 3 weeks ago
• ClearAnatomics / ClearMap
  ClearMap 2 with WobblyStitcher, TubeMap and CellMap
  ☆119Updated last week
• Washington-University / NHPPipelines
  Enhancements of HCP Pipelines for non-human primates
  ☆29Updated 2 years ago
• nighres / nighres
  Processing tools for high-resolution neuroimaging
  ☆72Updated 4 months ago