nerf-common / whole-brain-fUS
Whole-brain functional ultrasound imaging in awake head-fixed mice
☆16Updated 3 years ago
Alternatives and similar repositories for whole-brain-fUS
Users that are interested in whole-brain-fUS are comparing it to the libraries listed below
Sorting:
- Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…☆14Updated 2 years ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆37Updated last year
- Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain☆30Updated last month
- The ANTsX Ecosystem for Mapping the Mouse Brain☆11Updated last month
- A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support☆27Updated 2 weeks ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆25Updated 2 years ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆120Updated this week
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 4 years ago
- Stand alone fMRI software suite for layer-fMRI analyses.☆91Updated this week
- MR to CT for TUS acoustic simulations☆24Updated 2 months ago
- Cortical Parcellation☆10Updated 5 years ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆94Updated last month
- An open list of tools & resources for 'spikes': recordings of single-unit neural activity (action potentials).☆27Updated 2 years ago
- precon_all surface pipline☆21Updated last month
- Gradient Unwarping in Python☆35Updated 4 months ago
- ☆36Updated 3 years ago
- A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)☆69Updated last week
- fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/☆41Updated this week
- Automated 3D brain registration with support for multiple species and atlases.☆134Updated last week
- BIDS app wrapping recon-all from FreeSurfer☆41Updated 6 months ago
- Repository for Nipraxis course textbook☆14Updated last year
- A MATLAB toolbox for performing along-tract analysis of diffusion tensor imaging (DTI) MRI tractography data.☆44Updated 12 years ago
- fMRIPrep Lifespan - A robust, transparent workflow tailored for neonate and infant MRI☆31Updated this week
- ☆18Updated 3 years ago
- ☆179Updated last year
- ExploreASL: releases can be found in the main branch or within the releases tab. If you want to contribute, please contact us at h.j.muts…☆53Updated this week
- A Python implementation of 'dual-coding'☆41Updated last year
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆25Updated last year
- Generate a package-manager-friendly mouse brain atlases collection.☆22Updated last year
- Tools for mesh surface-based operations☆35Updated 2 months ago