Seqscope codes
☆11Nov 28, 2021Updated 4 years ago
Alternatives and similar repositories for Cho_Xi_Seqscope
Users that are interested in Cho_Xi_Seqscope are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Rearrrange data by a set of methods☆23Mar 6, 2025Updated last year
- ☆13Jul 15, 2022Updated 4 years ago
- Scripts for analyzing ATAC-STARR data.☆10Feb 5, 2024Updated 2 years ago
- ☆10Updated this week
- Minimal scripts to reproduce the RADICL-seq analysis of the Nature Communications manuscript☆11Jan 30, 2020Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated last year
- ☆10Apr 17, 2023Updated 3 years ago
- Alignment, quantification and fusion prediction from long RNA reads☆10Apr 11, 2022Updated 4 years ago
- Iteratively Adjusted Surrogate Variable Analysis☆10Aug 23, 2021Updated 5 years ago
- ☆15Sep 18, 2026Updated last month
- ☆10Apr 30, 2019Updated 7 years ago
- This is the repository which contains the code that was used to generate the results and figures of the “Single-cell RNA-sequencing revea…☆14Apr 14, 2026Updated 6 months ago
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 5 years ago
- FulQuant pipeline to identify and quantify transcript isoforms based on Nanopore long-read data☆10Jul 20, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Analysis of Cap Analysis of Gene Expression (CAGE) data using Bioconductor☆10Mar 19, 2026Updated 7 months ago
- ☆10Feb 2, 2022Updated 4 years ago
- Run DeepCell Applications☆10Apr 19, 2023Updated 3 years ago
- ☆14Jan 2, 2024Updated 2 years ago
- An R package to write logs.☆15Oct 16, 2026Updated 3 weeks ago
- SeekSoul™ Methyl Tools (SeekSoulMethyl) is a single-cell transcriptome + methylation analysis pipeline designed to analyze data generate…☆16Oct 8, 2026Updated 3 weeks ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆106Feb 26, 2025Updated last year
- Bootstrap imputation for scRNAseq data☆12Jul 18, 2020Updated 6 years ago
- A framework around Tensorflow-Keras that makes it easy to train and evaluate any deep learning architecture on imaging flow cytometry dat…☆13Dec 8, 2022Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Quantitative Fate Mapping: reconstructs the hierarchy and dynamics of progenitor states from retrospective lineage barcodes. Cell, 2022.☆10Oct 15, 2025Updated last year
- ☆19Jul 31, 2021Updated 5 years ago
- ARCADE: Agent-based model of heterogeneous cell populations in dynamic microenvironments☆12Oct 29, 2026Updated last week
- repo to explore spatial data in R/Bioconductor and Python☆12Dec 3, 2019Updated 6 years ago
- code for composite in situ imaging (cisi) analysis☆12Oct 26, 2020Updated 6 years ago
- Simple R script for plotting ideograms and annotating with bed files.☆13Sep 21, 2015Updated 11 years ago
- ☆15Oct 31, 2026Updated last week
- 10x single cell short- and long-read RNA sequencing☆12Jan 17, 2024Updated 2 years ago
- My personal blog on Github☆13Mar 5, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A study of performance of optimal transport.☆10Jul 4, 2020Updated 6 years ago
- Integrating Ribo-SEQ Upstream and Downstream Analysis☆12Oct 14, 2024Updated 2 years ago
- ☆11Oct 1, 2021Updated 5 years ago
- 16824 homework: weakly supervised object detection with PyTorch☆13Sep 5, 2018Updated 8 years ago
- Spatially aware dimension reduction for spatial transcriptomics.☆71Mar 18, 2025Updated last year
- ☆10Mar 19, 2020Updated 6 years ago
- Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS☆15Sep 4, 2026Updated 2 months ago