CCF-ChanLab / MSK-IMPACT-IOLinks
☆20Updated 4 years ago
Alternatives and similar repositories for MSK-IMPACT-IO
Users that are interested in MSK-IMPACT-IO are comparing it to the libraries listed below
Sorting:
- Hypoxia associated molecular feature analysis☆36Updated 6 years ago
- Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-se…☆18Updated last year
- Homologous recombination deficiency in TCGA PanCancer Atlas☆28Updated 5 years ago
- Bostongene cell deconvolution algorithm from RNAseq☆60Updated last year
- ☆59Updated 3 years ago
- ☆33Updated 4 years ago
- Mollecular Functional Portraits☆43Updated last year
- MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance i…☆43Updated 10 months ago
- Code repository for single cell RNA-seq☆39Updated 5 years ago
- ☆43Updated last month
- Transcriptomic tools to classify bladder tumours according to six published molecular classifications : Baylor, UNC, MDA, Lund, CIT-Curie…☆27Updated 3 years ago
- identifying disease critical cell types and programs from single cell RNAseq☆58Updated 3 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆47Updated last year
- Calculating Tumor microenvironment score☆29Updated 2 years ago
- Repository for Cibersortx☆61Updated 4 years ago
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Updated 5 years ago
- ☆48Updated last year
- ☆20Updated 4 years ago
- An R package to plot maps of clone distributions in somatic evolution☆18Updated 2 years ago
- An R package for classification of immune subtypes, in cancer, using gene expression data.☆46Updated last year
- Immune evasion before tumor invasion in early squamous lung cell carcinogenesis☆16Updated 4 years ago
- Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022☆38Updated last year
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆32Updated 5 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- ☆17Updated 2 years ago
- Install GISTIC2 by one line code; GISTIC2 docker image☆41Updated 2 years ago
- ☆41Updated 7 years ago
- This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".☆18Updated 6 years ago
- ☆30Updated 7 years ago
- An R package to time somatic mutations☆65Updated 5 years ago