CCF-ChanLab / MSK-IMPACT-IO
☆19Updated 3 years ago
Alternatives and similar repositories for MSK-IMPACT-IO:
Users that are interested in MSK-IMPACT-IO are comparing it to the libraries listed below
- Hypoxia associated molecular feature analysis☆35Updated 5 years ago
- Homologous recombination deficiency in TCGA PanCancer Atlas☆25Updated 4 years ago
- Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022☆36Updated last year
- Transcriptomic tools to classify bladder tumours according to six published molecular classifications : Baylor, UNC, MDA, Lund, CIT-Curie…☆25Updated 2 years ago
- Single cell RNA analysis about paper “Caloric restriction reprograms the single-cell transcriptional landscape of Rattus norvegicus aging…☆28Updated 5 years ago
- ☆29Updated 3 years ago
- Immune evasion before tumor invasion in early squamous lung cell carcinogenesis☆16Updated 3 years ago
- Ratio of the interferon-γ signature to the immunosuppression signature predicts anti-PD-1 therapy response in melanoma☆12Updated last year
- Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…☆45Updated 3 years ago
- This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".☆18Updated 5 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆42Updated last year
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 3 years ago
- Visualize the results of cell-cell communication analysis☆20Updated 2 years ago
- An R package for classification of immune subtypes, in cancer, using gene expression data.☆45Updated 2 months ago
- Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-se…☆15Updated 3 months ago
- Code repository site for manuscript: Unraveling the Heterogeneity of Tumor-Infiltrating Myeloid Cells in Immune Checkpoint Blockade: A Si…☆11Updated last year
- ☆14Updated 5 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated 2 years ago
- Mollecular Functional Portraits☆36Updated 10 months ago
- Code repository for single cell RNA-seq☆34Updated 4 years ago
- ☆16Updated last year
- Code for the identification step for CSI-Microbes☆27Updated 2 months ago
- ☆20Updated 4 years ago
- ☆29Updated last year
- ☆56Updated 2 years ago
- Transcriptomic classifier for Muscle-Invasive Bladder Cancer☆14Updated 2 years ago
- Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma☆77Updated 3 months ago
- Single cell transcriptomics reveals cerebrospinal fluid immune dysregulation during healthy brain aging and cognitive impairment☆28Updated last year
- code for data processing and visualisation associated with the stromal subclasses manuscript☆11Updated 4 years ago
- ☆14Updated last year