CCF-ChanLab / MSK-IMPACT-IOLinks
☆20Updated 4 years ago
Alternatives and similar repositories for MSK-IMPACT-IO
Users that are interested in MSK-IMPACT-IO are comparing it to the libraries listed below
Sorting:
- Hypoxia associated molecular feature analysis☆35Updated 5 years ago
- Homologous recombination deficiency in TCGA PanCancer Atlas☆28Updated 4 years ago
- Identification and Validation Robust Prognostic Biomarkers and Signatures in Solid Tumors☆31Updated 5 months ago
- Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-se…☆18Updated 10 months ago
- ☆59Updated 3 years ago
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆31Updated 5 years ago
- MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance i…☆44Updated 7 months ago
- ☆47Updated 8 months ago
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated 2 years ago
- This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".☆18Updated 6 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022☆37Updated last year
- Repository for Cibersortx☆61Updated 4 years ago
- Mollecular Functional Portraits☆43Updated last year
- An R package for classification of immune subtypes, in cancer, using gene expression data.☆46Updated 9 months ago
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Updated 4 years ago
- ☆32Updated 3 years ago
- Immune evasion before tumor invasion in early squamous lung cell carcinogenesis☆16Updated 4 years ago
- ☆20Updated 4 years ago
- Containerized cancer subtype prediction tools for gene expression, miRNA, DNA methylation, somatic mutations and copy number variation.☆27Updated 5 months ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆46Updated last year
- ☆14Updated 6 months ago
- Code repository for single cell RNA-seq