FenyoLab / PGxLinks
PGx supports proteogenomic intregration of mass spectrometry (MS) proteomics data with next generation sequencing (NGS) by mapping identified peptides onto their putative genomic coordinates.
☆10Updated last year
Alternatives and similar repositories for PGx
Users that are interested in PGx are comparing it to the libraries listed below
Sorting:
- nucleic acid folding☆103Updated last month
- WebLogo 3: Sequence Logos redrawn☆152Updated 4 months ago
- An RNA manipulation library.☆57Updated last year
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆118Updated this week
- Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)☆199Updated 2 months ago
- Python interface to running command-line and web-based MHC binding predictors☆98Updated 11 months ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆67Updated 3 years ago
- Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis☆42Updated 2 weeks ago
- Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…☆203Updated this week
- Peptide-MHC I binding affinity prediction☆215Updated 3 months ago
- De novo peptide sequencing for DDA and DIA by deep learning☆36Updated 4 years ago
- Interpretation of proteomics identification results☆51Updated last month
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆81Updated last year
- Git repository for FASTA36 sequence comparison software☆123Updated last month
- Semi-supervised learning for peptide identification from shotgun proteomics datasets☆134Updated 2 months ago
- deep residual neural network for classifying the pathogenicity of missense mutations.☆115Updated 4 years ago
- Tools for manipulating biological data, particularly multiple sequence alignments☆158Updated this week
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆41Updated last week
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆54Updated last week
- A Python framework for structural systems biology☆109Updated 4 years ago
- An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.☆94Updated 3 years ago
- G4Hunter (2012_2015)- IECB - Bordeaux☆16Updated 5 years ago
- A collection of available Python tools for Proteomics analysis☆60Updated 6 years ago
- RNA secondary structure/sequence profiles for homology search and alignment☆113Updated 10 months ago
- Create force-directed graphs of RNA secondary structures.☆105Updated 5 years ago
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆62Updated 4 months ago
- Modular BioJS compoment for a multiple sequence alignment☆171Updated 3 years ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆41Updated last year
- Graphical user interface for de novo sequencing of tandem mass spectra☆15Updated last year
- A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file☆33Updated 4 years ago