FenyoLab / PGxLinks
PGx supports proteogenomic intregration of mass spectrometry (MS) proteomics data with next generation sequencing (NGS) by mapping identified peptides onto their putative genomic coordinates.
☆10Updated last year
Alternatives and similar repositories for PGx
Users that are interested in PGx are comparing it to the libraries listed below
Sorting:
- Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…☆209Updated this week
- WebLogo 3: Sequence Logos redrawn☆152Updated 7 months ago
- Python interface to running command-line and web-based MHC binding predictors☆99Updated last year
- nucleic acid folding☆108Updated 4 months ago
- Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)☆213Updated 4 months ago
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆121Updated last week
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆68Updated 4 years ago
- Codon usage tables in code-friendly format + Python bindings☆40Updated 7 months ago
- RNA secondary structure/sequence profiles for homology search and alignment☆119Updated last year
- An RNA manipulation library.☆56Updated last year
- Semi-supervised learning for peptide identification from shotgun proteomics datasets☆143Updated 3 weeks ago
- sensitive and precise assembly of short sequencing reads☆162Updated last year
- Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data☆27Updated 2 years ago
- De novo peptide sequencing for DDA and DIA by deep learning☆39Updated 5 years ago
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆119Updated last week
- Git repository for FASTA36 sequence comparison software☆126Updated last month
- A fast multiple sequence alignment program.☆150Updated 5 months ago
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆81Updated last month
- Graphical user interface for de novo sequencing of tandem mass spectra☆15Updated last year
- High-quality circular representations of taxonomic and phylogenetic trees☆105Updated last year
- Protein 3D structure prediction pipeline☆90Updated 3 weeks ago
- Webserver and command line tool for annotating engineered plasmids☆134Updated 5 months ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆43Updated last month
- CRISPR Cas9 ontarget prediction software☆28Updated 9 months ago
- ReFramed: metabolic modeling package☆62Updated 2 months ago
- BGC Detection and Classification Using Deep Learning☆157Updated 2 years ago
- Interpretation of proteomics identification results☆53Updated 2 weeks ago
- Create force-directed graphs of RNA secondary structures.☆110Updated 5 years ago
- An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.☆95Updated 3 years ago
- Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.☆386Updated 5 months ago