FenyoLab / PGxLinks
PGx supports proteogenomic intregration of mass spectrometry (MS) proteomics data with next generation sequencing (NGS) by mapping identified peptides onto their putative genomic coordinates.
☆10Updated last year
Alternatives and similar repositories for PGx
Users that are interested in PGx are comparing it to the libraries listed below
Sorting:
- WebLogo 3: Sequence Logos redrawn☆152Updated 6 months ago
- nucleic acid folding☆108Updated 3 months ago
- Python interface to running command-line and web-based MHC binding predictors☆99Updated last year
- Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning…☆208Updated this week
- An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.☆95Updated 3 years ago
- Protein 3D structure prediction pipeline☆89Updated this week
- Codon usage tables in code-friendly format + Python bindings☆39Updated 6 months ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆43Updated last week
- Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies☆62Updated 6 months ago
- Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis☆42Updated 2 weeks ago
- Python interface to amino acid properties and IEDB☆57Updated last year
- An RNA manipulation library.☆56Updated last year
- Graphical user interface for de novo sequencing of tandem mass spectra☆15Updated last year
- Create force-directed graphs of RNA secondary structures.☆109Updated 5 years ago
- Git repository for FASTA36 sequence comparison software☆124Updated last week
- RNA secondary structure/sequence profiles for homology search and alignment☆116Updated last year
- PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering☆120Updated 2 weeks ago
- Tool for deep mutational scanning experiments.☆55Updated 8 months ago
- Webserver and command line tool for annotating engineered plasmids☆133Updated 4 months ago
- The Ribosome Binding Site (RBS) Calculator can predict the translation initiation rate of a protein coding sequence in bacteria and desig…☆58Updated 10 years ago
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆118Updated last week
- A python implementation of the Statistical Coupling Analysis (SCA)☆25Updated 6 years ago
- A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence☆108Updated last month
- MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …☆81Updated 3 weeks ago
- Galaxy Tool wrappers☆123Updated 2 weeks ago
- Tools for manipulating biological data, particularly multiple sequence alignments☆158Updated 3 weeks ago
- A Python framework for structural systems biology☆109Updated 4 years ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆68Updated 3 years ago
- Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)☆210Updated 4 months ago
- G4Hunter (2012_2015)- IECB - Bordeaux☆16Updated 5 years ago