Analysis software for Nanorate Sequencing (NanoSeq) experiments
☆36Aug 3, 2026Updated last week
Alternatives and similar repositories for NanoSeq
Users that are interested in NanoSeq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PTa Analysis TOolkit☆19Jun 9, 2026Updated 2 months ago
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆12May 12, 2025Updated last year
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 9 months ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Jun 6, 2019Updated 7 years ago
- Genome-wide TR catalog and variation clusters described in [Weisburd, Dolzhenko, et al. 2024]☆19Mar 26, 2026Updated 4 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.☆12Feb 25, 2021Updated 5 years ago
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆23Jul 28, 2025Updated last year
- longcallR is a tool for SNP calling, haplotype phasing, and allele-specific analysis with long-read RNA-seq data.☆96Aug 2, 2026Updated last week
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆25Apr 16, 2026Updated 3 months ago
- Interactive visualisation of CellphoneDB results☆13Jan 15, 2025Updated last year
- dN/dS methods to quantify selection in cancer and somatic evolution☆239May 15, 2025Updated last year
- The gview wiki migrated to GitHub.☆12Sep 3, 2020Updated 5 years ago
- analysis pipeline for CODEC data☆13Apr 22, 2026Updated 3 months ago
- ☆16Jul 7, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆39Nov 27, 2024Updated last year
- Just the leafviz parts of Leafcutter☆16Apr 2, 2026Updated 4 months ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- Genome Assembly 102☆19Apr 23, 2025Updated last year
- Human mitochondrial variants annotation using HmtVar.☆18Oct 16, 2023Updated 2 years ago
- STAG: Species Tree from All Genes☆36Dec 10, 2018Updated 7 years ago
- Detecting NUMTs from WGS☆13Nov 19, 2023Updated 2 years ago
- Tandem repeat genotyping with long reads☆38Sep 23, 2025Updated 10 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Statistics and analysis for variation graphs☆52Dec 17, 2024Updated last year
- mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.☆20Feb 26, 2026Updated 5 months ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Jul 30, 2026Updated last week
- Structural variant VCF annotation, duplicate removal and comparison☆38Oct 14, 2025Updated 9 months ago
- SCeptre is a python package that extends the functionalities of Scanpy to analyze multiplexed single-cell proteomics data.☆18Mar 18, 2024Updated 2 years ago
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- A simple script to run an alignment with nucmer and visualise its results.☆10Apr 17, 2023Updated 3 years ago
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆109Jun 25, 2026Updated last month
- Genome-in-a-Bottle stratifications for major references☆15Apr 28, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆36Oct 27, 2025Updated 9 months ago
- An R package for finding non-adenosine residues in poly(A) tails of ONT direct RNA sequencing reads☆16Aug 1, 2026Updated last week
- ☆11Sep 4, 2024Updated last year
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆14Apr 5, 2025Updated last year
- ☆10Jan 18, 2023Updated 3 years ago
- Full-length transcriptome splicing and mutation analysis☆93Mar 23, 2026Updated 4 months ago
- Proteogenomics database-generation tool for protein haplotypes and variants☆12Jun 19, 2025Updated last year