cambridgeltl / nn_for_LBDLinks
Repository for paper 'Neural networks for open and closed Literature-based Discovery'
☆9Updated 5 years ago
Alternatives and similar repositories for nn_for_LBD
Users that are interested in nn_for_LBD are comparing it to the libraries listed below
Sorting:
- a module to calculate the MeSH similarity☆25Updated 3 years ago
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆45Updated 2 years ago
- Visualize the proportion of results for a given PubMed search over time and compare searches to one another!☆13Updated 2 years ago
- a module to calculate the MeSH similarity☆26Updated 4 years ago
- Tools to create a clinical knowledge graph from biomedical literature. Includes wrappers for NCBI Eutils, cTakes annotator and Neo4J☆16Updated last year
- Retrieve and process PubTator annotations☆44Updated last year
- ☆68Updated 3 years ago
- Grounding of biomedical named entities with contextual disambiguation☆45Updated last week
- Analysis code for knowledge discovery project☆12Updated 6 years ago
- Computing term cooccurrence in MEDLINE☆18Updated 4 years ago
- Medical Relations and Entities Extraction☆37Updated 3 years ago
- Serial KinderMiner (or simply SKiM) is general literature-based discovery system for querying all ~30 million PubMed abstracts.☆8Updated 4 years ago
- Cataloging pharmacotherapies in clinical trial from ClinicalTrials.gov☆27Updated 9 years ago
- ☆41Updated 5 years ago
- Scientific literature explorer. Runs a Pubmed or Semantic Scholar search and allows user to explore high-level structure of result papers☆45Updated last month
- ☆24Updated 4 years ago
- ☆16Updated last year
- Resources for grounding protein families and complexes from text and describing their hierarchical relationships.☆18Updated last year
- using AI model to infer patient phenotypes from identified named entities (instances of biomedical concepts)☆10Updated 2 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Updated 4 years ago
- 📖 Generation and Applications of Knowledge Graphs in Systems and Networks Biology☆29Updated 5 years ago
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆40Updated last year
- Estimate similarity of medical concepts based on Unified Medical Language System (UMLS)☆16Updated 3 years ago
- A Bio2BEL package for DrugBank (https://www.drugbank.ca)☆10Updated 4 years ago
- A Python package to download full article PDFs from OA publications☆47Updated 6 months ago
- An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…☆44Updated last year
- PubMedPortable automatically builds a PostgreSQL relational database schema and a Xapian full text index on PubMed XML files as well as i…☆26Updated 6 years ago
- Method for drug repurposing from knowledge graphs and literature☆35Updated 4 years ago
- 🎡 Unified access to OLS instances like from the EBI and TIB☆12Updated this week
- A project to capture biological pathway data from academic papers☆29Updated 4 months ago