Alternatives and similar repositories for pubmed-by-year

Users that are interested in pubmed-by-year are comparing it to the libraries listed below

• hetio / medline
  Computing term cooccurrence in MEDLINE
  ☆18Updated 4 years ago
• CogStack / nlp2phenome
  using AI model to infer patient phenotypes from identified named entities (instances of biomedical concepts)
  ☆10Updated 2 years ago
• beamandrew / cui2vec
  ☆55Updated 5 years ago
• OHDSI / PheValuator
  An R package for evaluating phenotype algorithms.
  ☆21Updated 3 weeks ago
• clinicalml / prancer
  Platform enabling Rapid Annotation for Clinical Entity Recognition
  ☆49Updated 3 years ago
• dermatologist / ckblib
  Tools to create a clinical knowledge graph from biomedical literature. Includes wrappers for NCBI Eutils, cTakes annotator and Neo4J
  ☆16Updated last year
• kdpsingh / clinspacy
  Clinical Natural Language Processing using spaCy, scispacy, and medspacy
  ☆100Updated last year
• hibaahsan / MIMIC-SBDH
  Dataset containing 7,025 discharge summary notes from the MIMIC III dataset annotated for 7 SBDHs
  ☆17Updated 3 years ago
• NCBI-Hackathons / CTEligible
  Use machine learning to find patterns of similar eligibility protocol criteria for clinical trials
  ☆18Updated 6 years ago
• titipata / grant_database
  Downloader, preprocessor, parser and deduper for NIH and NSF grants
  ☆22Updated 7 years ago
• greenelab / pubtator
  Retrieve and process PubTator annotations
  ☆44Updated 2 years ago
• OHDSI / CohortDiagnostics
  An R package for performing various cohort diagnostics.
  ☆47Updated last week
• luozhhub / pyMeSHSim
  a module to calculate the MeSH similarity
  ☆26Updated 3 years ago
• BMDSoftware / neji
  Flexible and powerful platform for biomedical information extraction from text
  ☆39Updated 8 years ago
• OHDSI / FeatureExtraction
  An R package for generating features (covariates) for a cohort using data in the Common Data Model.
  ☆66Updated last week
• spiros / chronological-map-phenotypes
  Machine-readable version of electronic health record phenotypes for Kuan V. and Denaxas S. et al.
  ☆49Updated last year
• NUSCRIPT / OMOP_to_Graph
  Transform the OMOP model to graph model
  ☆24Updated 9 months ago
• sorgerlab / famplex
  Resources for grounding protein families and complexes from text and describing their hierarchical relationships.
  ☆18Updated last year
• developmentAC / beagleTM
  A text mining tool for developing visual and interactive relationship networks from PubMed article information.
  ☆16Updated last year
• p2 / ClinicalTrialsNLP
  Classes for ClinicalTrials.gov related projects
  ☆47Updated 6 years ago
• uf-hobi-informatics-lab / NLPreprocessing
  A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization
  ☆32Updated last year
• bionlplab / bioc
  Data structures and code to read/write BioC XML and Json.
  ☆32Updated 2 years ago
• PLOS / allofplos
  Repository for the allofplos project.
  ☆65Updated 3 months ago
• jiagengjie / Estimating-Genetic-Parameters
  ☆10Updated 4 years ago
• rOpenHealth / rpubmed
  Tools for extracting and processing Pubmed and Pubmed Central records.
  ☆47Updated 5 years ago
• ijmarshall / robotreviewer
  Automatic synthesis of RCTs
  ☆159Updated 3 years ago
• ncbo / ncbo_rest_sample_code
  Sample code that demonstrates the use of the NCBO REST services
  ☆43Updated last year
• ropensci-archive / cleanEHR
  ARCHIVED Essential tools and utility functions to facilitate the data processing pipeline, data cleaning and data analysing of clinical…
  ☆56Updated 3 years ago
• spiros / tofu
  Tofu is a Python tool for generating synthetic UK Biobank data.
  ☆62Updated 2 years ago
• mdcollab / covidclinicaldata
  Coronavirus Disease 2019 (COVID-19) Clinical Data Repository
  ☆52Updated 2 years ago