rcelebi / GraphEmbedding4DDI
☆16Updated last year
Alternatives and similar repositories for GraphEmbedding4DDI:
Users that are interested in GraphEmbedding4DDI are comparing it to the libraries listed below
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆45Updated 2 years ago
- Code to accompany the "Understanding the Performance of Knowledge Graph Embeddings in Drug Discovery" manuscript (Artificial Intelligence…☆33Updated 8 months ago
- Code to accompany the "Implications of Topological Imbalance for Representation Learning on Biomedical Knowledge Graphs" (Briefings in B…☆17Updated last month
- ☆56Updated 4 years ago
- A Knowledge Graph for Relational Learning On Biological Data☆95Updated last year
- Biomedical Relation Extraction with Knowledge Graph-based Recommendations☆9Updated last year
- COVID-19 Knowledge Graph: a computable, multi-modal, cause-and-effect knowledge model of COVID-19 pathophysiology☆44Updated 3 years ago
- Turning Ontologies Plus Annotation Properties into Vectors☆35Updated 4 years ago
- Example code and data samples for "An experimentally validated approach to automated biological evidence generation in drug discovery usi…☆10Updated last year
- Analysis notebooks and database interaction scripts for the nsides project☆19Updated 7 months ago
- Drug-Drug Interaction Prediction Based on Knowledge Graph Embeddings and Convolutional-LSTM Network☆90Updated 5 years ago
- ☆128Updated 2 years ago
- [Bioinformatics 2021] This is the repo for the paper `SumGNN: Multi-typed Drug Interaction Prediction via Efficient Knowledge Graph Summa…☆85Updated 8 months ago
- ☆29Updated last year
- Drug repurposing for COVID-19 using literature-based discovery☆27Updated 2 years ago
- Biomedical Term Annotator☆9Updated last month
- A library for knowledge graph embedding models☆16Updated 4 years ago
- Source code and data repository for "Ensembles of knowledge graph embedding models improve predictions for drug discovery"☆20Updated last year
- ☆16Updated 9 months ago
- Method for drug repurposing from knowledge graphs and literature☆34Updated 4 years ago
- OpenBioLink is a resource and evaluation framework for evaluating link prediction models on heterogeneous biomedical graph data.☆149Updated 11 months ago
- SkipGNN: Predicting Molecular Interactions with Skip-Graph Networks (Scientific Reports)☆65Updated 4 years ago
- Convert Description Logic axioms into a graph, and generate embedding representation for the nodes.☆19Updated 2 years ago
- 📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures☆65Updated this week
- The Clinical Trials Knowledge Graph☆57Updated 2 years ago
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.☆59Updated last year
- Build system for the RTX-KG2pre biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)☆39Updated last week
- 📊 Results from the reproducibility and benchmarking studies presented in "Bringing Light Into the Dark: A Large-scale Evaluation of Know…☆35Updated 2 years ago
- A Standard Database for Drug Repositioning☆19Updated 7 years ago
- 🏅 KG Inductive Link Prediction Challenge (ILPC) 2022☆84Updated 3 years ago