CogStack / nlp2phenomeLinks
using AI model to infer patient phenotypes from identified named entities (instances of biomedical concepts)
☆10Updated 2 years ago
Alternatives and similar repositories for nlp2phenome
Users that are interested in nlp2phenome are comparing it to the libraries listed below
Sorting:
- Public release of the DeepPhe analytic software☆30Updated 2 years ago
- Use machine learning to find patterns of similar eligibility protocol criteria for clinical trials☆18Updated 6 years ago
- Data structures and code to read/write BioC XML and Json.☆33Updated last year
- Python library for work with BioCreative files☆13Updated 7 years ago
- A Serverless Text Annotation Tool for Corpus Development☆56Updated 4 months ago
- Text annotation tool for team collaboration☆41Updated last year
- Grounding of biomedical named entities with contextual disambiguation☆44Updated last month
- The symptom ontology was designed around the guiding concept of a symptom being: “A perceived change in function, sensation or appearance…☆41Updated last year
- Transform the OMOP model to graph model☆22Updated 6 months ago
- Tool that converts between BioC XML files and BioC JSON files☆16Updated 8 years ago
- OHDSI Ananke - A Tool for Mapping Between OHDSI Concept Identifiers to Unified Medical Language System (UMLS) identifiers☆14Updated 4 years ago
- Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.☆41Updated 4 years ago
- Semantic Similarity Measures using Disjunctive Shared Information☆25Updated 11 months ago
- Visualize the proportion of results for a given PubMed search over time and compare searches to one another!☆12Updated 2 years ago
- Classes for ClinicalTrials.gov related projects☆47Updated 5 years ago
- A near real-time named-entity recognizer☆60Updated last year
- An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…☆43Updated last year
- Semantic query and text mining tool☆22Updated last year
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆50Updated 3 years ago
- ACT COVID Ontology☆15Updated 3 years ago
- Universal Dependencies (v1.0) for the GENIA 1.0 Treebank, along with additional raw abstracts and metadata.☆22Updated 5 years ago
- An R package for evaluating phenotype algorithms.☆18Updated 8 months ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- Source code used to develop the OHDSI knowledge base of sources with information relevant for assessing assocations between drugs and hea…☆55Updated 6 years ago
- a module to calculate the MeSH similarity☆25Updated 3 years ago
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆33Updated last year
- Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!☆14Updated last year
- An information extraction system for free-text eligibility criteria☆37Updated 6 years ago
- ☆55Updated 5 years ago
- A Silver Standard Corpus of Human Phenotype-Gene Relations☆13Updated 2 years ago