CogStack / nlp2phenomeLinks
using AI model to infer patient phenotypes from identified named entities (instances of biomedical concepts)
☆10Updated 2 years ago
Alternatives and similar repositories for nlp2phenome
Users that are interested in nlp2phenome are comparing it to the libraries listed below
Sorting:
- Public release of the DeepPhe analytic software☆30Updated last month
- Transform the OMOP model to graph model☆24Updated 9 months ago
- OHDSI Ananke - A Tool for Mapping Between OHDSI Concept Identifiers to Unified Medical Language System (UMLS) identifiers☆14Updated 5 years ago
- Lookup PubMed records and make Publication objects with info about a scientific publication☆41Updated 2 years ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆89Updated 2 years ago
- ☆12Updated 5 years ago
- Use machine learning to find patterns of similar eligibility protocol criteria for clinical trials☆18Updated 6 years ago
- Grounding of biomedical named entities with contextual disambiguation☆44Updated 2 months ago
- [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis☆33Updated last year
- ☆55Updated 5 years ago
- Load all concepts and relationships from UMLS into a Neo4j database☆12Updated 4 years ago
- ☆70Updated 3 years ago
- Training materials for Vocabulary & CDM Tutorial.☆21Updated 6 years ago
- Data structures and code to read/write BioC XML and Json.☆32Updated 2 years ago
- The symptom ontology was designed around the guiding concept of a symptom being: “A perceived change in function, sensation or appearance…☆42Updated last year
- An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…☆44Updated last year
- Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records☆37Updated 2 years ago
- ☆14Updated 7 months ago
- Classes for ClinicalTrials.gov related projects☆47Updated 6 years ago
- A generator of synthetic psychiatric notes.☆17Updated 5 years ago
- ☆24Updated 4 years ago
- Ontology Tutorial☆73Updated 2 years ago
- ☆23Updated 2 years ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆85Updated last month
- A Serverless Text Annotation Tool for Corpus Development☆57Updated 7 months ago
- Visualize the proportion of results for a given PubMed search over time and compare searches to one another!☆15Updated 2 years ago
- Flexible and powerful platform for biomedical information extraction from text☆39Updated 8 years ago
- ETL UK-Biobank☆16Updated 2 years ago
- Text annotation tool for team collaboration☆42Updated last year
- Natural Language to SQL Queries in the OMOP CDM Datasets☆11Updated 2 years ago