Method for drug repurposing from knowledge graphs and literature
☆36Aug 28, 2020Updated 5 years ago
Alternatives and similar repositories for multi-drug-embedding
Users that are interested in multi-drug-embedding are comparing it to the libraries listed below
Sorting:
- Cataloging pharmacotherapies in clinical trial from ClinicalTrials.gov☆26Jun 17, 2016Updated 9 years ago
- Processing high-throughput drug indication resources.☆19Mar 15, 2016Updated 9 years ago
- Source code and data repository for "Ensembles of knowledge graph embedding models improve predictions for drug discovery"☆20Jan 17, 2024Updated 2 years ago
- ☆11Jan 20, 2020Updated 6 years ago
- A Bio2BEL package for DrugBank (https://www.drugbank.ca)☆10Dec 14, 2020Updated 5 years ago
- Implements the blood brain barrier score described in: J. Med. Chem. 2019, 62, 21, 9824-9836 (https://doi.org/10.1021/acs.jmedchem.9b0122…☆14Sep 27, 2020Updated 5 years ago
- Trials of pre-trained BERT models for the medical domain in Japanese.☆12Nov 21, 2020Updated 5 years ago
- Clinical Text Mining☆12Aug 15, 2017Updated 8 years ago
- Computational Analysis of Novel Drug Opportunities☆40Jan 9, 2026Updated 2 months ago
- a protein descriptor for site prediction☆16Aug 9, 2019Updated 6 years ago
- Standard terms for annotating mammalian phenotypic data☆20Mar 2, 2026Updated last week
- Implementation of ReSimNet for drug response similarity prediction☆40Dec 20, 2023Updated 2 years ago
- Protein Graph in Python for MetaPath-ML and more.☆20Jun 20, 2025Updated 8 months ago
- Official repository for multitask deep learning models.☆19Dec 8, 2020Updated 5 years ago
- Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap☆18Mar 7, 2020Updated 6 years ago
- A Motif-Based PPI Searching Pipeline for PPI Mining and Protein Design☆21Feb 11, 2025Updated last year
- ☆19Sep 14, 2024Updated last year
- Bioinformatics and Cheminformatics protocols for peptide analysis☆45Dec 22, 2022Updated 3 years ago
- RightField is an open-source tool for adding ontology term selection to Excel spreadsheets. RightField is used by a 'Template Creator' to…☆31Apr 10, 2025Updated 11 months ago
- Repo for downloading and storing OMIM data☆19Oct 6, 2016Updated 9 years ago
- In Silico Prediction of Novel Therapeutic Targets Using Gene – Disease Association Data☆18Jan 19, 2018Updated 8 years ago
- ☆26Jan 14, 2021Updated 5 years ago
- TIP: Tri-graph Interaction Propagation model for Polypharmacy Side Effect Prediction (GRL@NeurIPS, 2019)☆25Dec 2, 2022Updated 3 years ago
- Rare disease identification from free-text clinical notes with ontologies and weak supervision☆32May 6, 2023Updated 2 years ago
- A comprehensive computational pipeline that bridges single-cell genomics and cheminformatics to accelerate Alzheimer's Disease research. …☆12Jul 13, 2025Updated 7 months ago
- lib310 python package☆23May 24, 2023Updated 2 years ago
- Extracting biomedical relationships from literature with Snorkel 🏊☆58Feb 1, 2021Updated 5 years ago
- Conformer multi-instance machine Learning☆60Sep 29, 2025Updated 5 months ago
- Neural relational inference for molecular dynamics simulations☆59May 30, 2023Updated 2 years ago
- Synthetic coordinates for GNNs, as proposed in "Directional Message Passing on Molecular Graphs via Synthetic Coordinates" (NeurIPS 2021)☆32Apr 26, 2023Updated 2 years ago
- DEEPScreen: Virtual Screening with Deep Convolutional Neural Networks Using Compound Images☆115Jul 25, 2024Updated last year
- A single-page web app to build graphs and run algorithms against them☆27Updated this week
- Lamarckian Evolutionary Algorithm for de novo Drug Design☆27Mar 3, 2023Updated 3 years ago
- 本仓库主要用于讨论李俊慧老师的《经济学讲义》、文章以及张五常老师的《经济解释》☆10Jun 2, 2020Updated 5 years ago
- Automatic R pipeline for FGSEA and classic enrichment (GO, KEGG, Reactome, Hallmark)☆18Oct 30, 2025Updated 4 months ago
- Methods for mapping genomic data onto 3D protein structure.☆28May 17, 2022Updated 3 years ago
- Source codes for 'A baseline for reliable molecular prediction models via Bayesian learning'☆29Nov 16, 2020Updated 5 years ago
- A de novo prediction tool of chromatin accessible regions for plant genomes☆10Aug 12, 2021Updated 4 years ago
- Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing☆33Sep 22, 2017Updated 8 years ago