broadinstitute / SnowmanSVLinks
Structural variation and indel detection using rolling local string graph assembly
☆9Updated 8 years ago
Alternatives and similar repositories for SnowmanSV
Users that are interested in SnowmanSV are comparing it to the libraries listed below
Sorting:
- Hemang Parikh☆11Updated 9 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 3 months ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Recommended Graphtyper pipelines☆14Updated 4 years ago
- Novel Adjacency Identification with Barcoded Reads☆13Updated 3 years ago
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Updated 8 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 5 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)☆14Updated 7 years ago
- ☆16Updated 4 months ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆17Updated 6 years ago
- Hidden Markov Model based Copy number caller☆20Updated 7 months ago
- Integrated Variant Caller☆17Updated 7 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- Detects human contamination in bam files☆16Updated 4 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated last month
- ☆21Updated last month
- Sample Contamination Estimate from VCF☆19Updated 7 months ago
- gvcf aggregation tool☆12Updated 7 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 3 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago