broadinstitute / SnowmanSV
Structural variation and indel detection using rolling local string graph assembly
☆9Updated 8 years ago
Alternatives and similar repositories for SnowmanSV:
Users that are interested in SnowmanSV are comparing it to the libraries listed below
- Prioritize structural variants based on CADD scores☆29Updated 4 years ago
- Hemang Parikh☆11Updated 9 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 months ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- Recommended Graphtyper pipelines☆14Updated 4 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- PopSTR - A Population based microsatellite genotyper☆32Updated last year
- gvcf aggregation tool☆12Updated 7 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)☆14Updated 7 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 5 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆17Updated 6 years ago
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- v2.x of the microassembly based somatic variant caller☆20Updated 2 weeks ago
- Functions to compare a SV call sets against a truth set.☆29Updated 11 months ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Population-wide Deletion Calling☆35Updated 7 months ago
- ☆14Updated last year
- Mapping-free variant caller for short-read Illumina data☆19Updated 5 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 3 weeks ago
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Updated 8 years ago
- A long-read analysis toolbox for cancer and population genomics☆22Updated 2 months ago
- Novel Adjacency Identification with Barcoded Reads☆13Updated 2 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Hidden Markov Model based Copy number caller☆20Updated 5 months ago