☆13Nov 19, 2021Updated 4 years ago
Alternatives and similar repositories for enformer-pytorch
Users that are interested in enformer-pytorch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Sep 8, 2023Updated 3 years ago
- Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) i…☆19Jun 25, 2025Updated last year
- A neural network model to predict splice site usage and splicing-altering mutations☆17Jul 24, 2025Updated last year
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆11Mar 11, 2020Updated 6 years ago
- Alternative Splicing ToolKit☆10Oct 29, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- [NPJ AI] A foundation model for individual genome modelling☆29May 9, 2026Updated 5 months ago
- ☆10Oct 8, 2025Updated last year
- ☆25Aug 20, 2024Updated 2 years ago
- ☆10Jul 28, 2022Updated 4 years ago
- ☆12Feb 19, 2021Updated 5 years ago
- ☆17Oct 30, 2026Updated last week
- Snakemake workflow for comparing E-G links to experimental data☆28Sep 10, 2026Updated last month
- SNp Exploration and Analysis using EPigenomics data☆12Oct 15, 2026Updated 3 weeks ago
- A Python module for loading phenotypic and genetic data from the UK Biobank.☆41Nov 3, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Code to generate retinal pigmentation scores from color fundus photographs datasets☆12Mar 20, 2024Updated 2 years ago
- A deep learning approach to predicting transcription initiation from sequence at single nucleotide resolution☆15Jul 14, 2026Updated 3 months ago
- The full training script for Enformer - Tensorflow Sonnet☆18Apr 18, 2022Updated 4 years ago
- Machine learning methods for DNA sequence analysis.☆68Sep 30, 2026Updated last month
- A simple script I use to send commands from emacs to iTerm2 on Mac OS X☆11Jan 25, 2018Updated 8 years ago
- A BGEN file format reader.☆12Jan 7, 2025Updated last year
- For fine-tuning Enformer using paired WGS & gene expression data☆32Aug 27, 2025Updated last year
- R package for nucleotide conversion sequencing data analysis☆17Jan 13, 2026Updated 9 months ago
- Reanalysis of the repressive capacity of promoter DNA methylation☆11Feb 14, 2019Updated 7 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆14Apr 2, 2024Updated 2 years ago
- ☆11Jun 24, 2024Updated 2 years ago
- Code repo for paper on Generative Adversarial Networks for Medical Imaging☆11Mar 20, 2020Updated 6 years ago
- A short tutorial to using DL and keras for genomics with sequence data.☆16Dec 3, 2020Updated 5 years ago
- Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch☆575Jun 26, 2026Updated 4 months ago
- Python port of the R Bioconductor `seqLogo` package☆37Feb 20, 2026Updated 8 months ago
- A Predictive World Model of the Transcriptome☆35Oct 18, 2025Updated last year
- A collection of implementations of fair ML algorithms☆12Jan 7, 2018Updated 8 years ago
- Repository for modeling PRO-cap data with the BPNet-like model, ProCapNet.☆23Oct 4, 2026Updated last month
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).☆10Jun 5, 2021Updated 5 years ago
- pipelines to process scRNA-seq data☆12Jan 11, 2021Updated 5 years ago
- ☆16May 7, 2023Updated 3 years ago
- In this lab, you will learn how to use Amazon SageMaker to fine-tune a pretrained Hugging Face LLM using AWS Trainium accelerators, and t…☆12Feb 20, 2024Updated 2 years ago
- ☆13Sep 30, 2023Updated 3 years ago
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆22Oct 27, 2021Updated 5 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆12Jan 18, 2021Updated 5 years ago