A pipeline to identify BLAST hits and perform phylogenetic analysis across multiple queries and local genome databases
☆28Sep 11, 2026Updated 3 weeks ago
Alternatives and similar repositories for blast-align-tree
Users that are interested in blast-align-tree are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Evolutionary Sparse Learning - Paired Species Contrast☆17Jul 22, 2026Updated 2 months ago
- DFAST Quality Control: Taxonomy and completeness check☆19Jun 17, 2026Updated 3 months ago
- Knowledge-based Identification of Pathway Enzymes (KIPEs) performs an automatic annotation of the flavonoid biosynthesis steps in a new t…☆17Jun 23, 2026Updated 3 months ago
- An R package to perform systematic quality checks on comparative genomics analyses☆12Mar 5, 2026Updated 7 months ago
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Nov 25, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Origin of Chromosomal Replication Assessment. Python tool for the analysis of circular bacterial DNA sequences in order to find their ori…☆18Oct 10, 2025Updated 11 months ago
- PacBio BAM toolkit☆56Feb 26, 2025Updated last year
- Main scripts and commands used to analyze goat population genetic and domestication☆19Mar 25, 2019Updated 7 years ago
- Phylogenetic profiling with orthology data☆13Oct 2, 2026Updated last week
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆12Dec 7, 2022Updated 3 years ago
- Parallel implementation of OrthoMCL☆21Aug 26, 2022Updated 4 years ago
- The MafFilter genome alignment processor☆19Aug 27, 2026Updated last month
- Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria☆19Jul 29, 2013Updated 13 years ago
- A python tool for rapidly assessing the monophyly of user-defined groups in phylogenetic trees.☆12Apr 25, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Taxon-aware analysis of clustered protein sequences☆31Jul 1, 2024Updated 2 years ago
- Mapping-Assisted Targeted-Assembly for Metagenomics☆27Mar 28, 2025Updated last year
- Improved long-read assembly by preserving contained reads☆29Aug 22, 2024Updated 2 years ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- A software for gap filling in genome assemblies☆10Aug 12, 2022Updated 4 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆39Mar 5, 2023Updated 3 years ago
- Orpheum (Previously called and published under sencha) is a Python package for directly translating RNA-seq reads into coding protein seq…☆19Oct 4, 2022Updated 4 years ago
- The TEA-GCN pipeline to construct gene co-functional and co-regulatory networks from public transcriptomes using condition-specific ensem…☆21May 11, 2026Updated 4 months ago
- cobraa (coalescent based reconstruction of ancient admixture): a hidden Markov model to infer ghost admixture using just a diploid sequen…☆25Jun 17, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Using Digitized Collections-Based Data in Research: Applications for Ecology, Phylogenetics, and Biogeography Botany 2026.☆16Aug 4, 2026Updated 2 months ago
- A framework for training graph neural networks to untangle assembly graphs obtained from OLC-based de novo genome assemblers.☆52Dec 9, 2025Updated 10 months ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆35Jan 15, 2025Updated last year
- ☆16Apr 11, 2026Updated 5 months ago
- Test sets and pipeline scripts for pan-genomic graph analysis☆18Jan 30, 2025Updated last year
- ☆33Jul 9, 2024Updated 2 years ago
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆15Aug 27, 2023Updated 3 years ago
- Programs implementing the trio-binning genome assembly method☆22Nov 22, 2023Updated 2 years ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆21Jul 12, 2026Updated 2 months ago
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆19May 11, 2026Updated 4 months ago
- Fast metagenome analysis toolkit☆29Sep 3, 2024Updated 2 years ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆211Sep 28, 2026Updated last week
- Robust individual and aggregate checksums for nucleotide sequences☆18Mar 3, 2026Updated 7 months ago
- A tool for motif annotation and visualization in tandem repeats.☆15May 26, 2025Updated last year
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆16Apr 22, 2024Updated 2 years ago