Alternatives and similar repositories for SciFive

Users that are interested in SciFive are comparing it to the libraries listed below

• facebookresearch / bio-lm
  We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.
  ☆160Updated 3 years ago
• uf-hobi-informatics-lab / ClinicalTransformerRelationExtraction
  A project for developing transformer-based models for clinical relation extraction
  ☆128Updated last year
• uf-hobi-informatics-lab / ClinicalTransformerNER
  a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms
  ☆147Updated last year
• cambridgeltl / sapbert
  [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.
  ☆190Updated 2 years ago
• kamalkraj / BioELECTRA
  BioELECTRA
  ☆50Updated 3 years ago
• GanjinZero / CODER
  CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]
  ☆78Updated 2 years ago
• GanjinZero / KeBioLM
  Improving Biomedical Pretrained Language Models with Knowledge [BioNLP 2021]
  ☆65Updated 2 years ago
• usmaann / BioALBERT
  Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT
  ☆29Updated 3 years ago
• salrowili / BioM-Transformers
  BioM-Transformers: Building Large Biomedical Language Models with BERT, ALBERT and ELECTRA
  ☆37Updated last year
• Yuanhy1997 / GenBioEL
  Generative Biomedical Entity Linking via Knowledge Base-Guided Pre-training and Synonyms-Aware Fine-tuning [NAACL 2022]
  ☆19Updated 2 years ago
• cambridgeltl / cometa
  Corpus of Online Medical EnTities: the cometA corpus
  ☆50Updated 2 months ago
• JohnGiorgi / seq2rel
  The corresponding code for our paper: A sequence-to-sequence approach for document-level relation extraction.
  ☆63Updated last year
• dmis-lab / BioSyn
  ACL'2020: Biomedical Entity Representations with Synonym Marginalization
  ☆167Updated last year
• ncbi / bert_gt
  ☆32Updated last year
• dmis-lab / BioLAMA
  EMNLP'2021: Can Language Models be Biomedical Knowledge Bases?
  ☆57Updated 2 years ago
• dmis-lab / bioasq-biobert
  Pre-trained Language Model for Biomedical Question Answering
  ☆123Updated 2 years ago
• sg-wbi / belb
  Biomedical Entity Linking Benchmark
  ☆13Updated 5 months ago
• Machine-Learning-for-Medical-Language / cnlp_transformers
  Transformers for Clinical NLP
  ☆25Updated last week
• dhdhagar / arboEL
  Entity Linking & discovery solution. Agarwal et al., "Entity Linking via Explicit Mention-Mention Coreference Modeling", NAACL 2022.
  ☆27Updated last year
• allenai / SciREX
  Data/Code Repository for https://api.semanticscholar.org/CorpusID:218470122
  ☆133Updated 10 months ago
• panushri25 / emrQA
  Code for the emrQA question answering dataset
  ☆149Updated 3 years ago
• GanjinZero / ICD-MSMN
  Code Synonyms Do Matter: Multiple Synonyms Matching Network for Automatic ICD Coding [ACL 2022]
  ☆52Updated 2 years ago
• ncbi-nlp / BLUE_Benchmark
  BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.
  ☆296Updated 3 years ago
• svjan5 / medtype
  MedType: Improving Medical Entity Linking with Semantic Type Prediction
  ☆116Updated 2 years ago
• jind11 / PubMed-PICO-Detection
  PubMed PICO Element Detection Dataset
  ☆57Updated 6 years ago
• whaleloops / KEPT
  auto icd coding with prompt
  ☆49Updated last year
• abachaa / MEDIQA2021
  ☆23Updated this week
• allenai / ms2
  ☆67Updated 2 years ago
• dmis-lab / KAZU-NER-module
  EMNLP 2022: Biomedical NER for the Enterprise with Distillated BERN2 and the Kazu Framework
  ☆11Updated 9 months ago
• zhehengluoK / Biomedical-Text-Summarization-Survey
  This repository lists papers, codes, and datasets in Biomedical Text Summarisation based on PLM
  ☆23Updated 2 years ago