awslabs / amazon-omics-tools
☆19Updated this week
Related projects ⓘ
Alternatives and complementary repositories for amazon-omics-tools
- ☆63Updated this week
- Linter rules for Nextflow DSL scripts☆28Updated last week
- Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…☆70Updated this week
- AWS Quick Start Team☆24Updated last month
- BaseSpace Python SDK☆37Updated 3 years ago
- This solution provides a framework for Next Generation Sequencing (NGS) genomics secondary-analysis pipelines using AWS Step Functions an…☆38Updated 10 months ago
- Repository of Nextflow+BioContainers workflows☆14Updated 3 years ago
- ☆147Updated 6 months ago
- Study management software for research organizations.☆15Updated 2 months ago
- A collection of Python clients and accessory scripts for interacting with the Cromwell☆22Updated 2 years ago
- Hummingbird: Efficient Performance Prediction for Executing Genomic Applications in the Cloud: https://doi.org/10.1093/bioinformatics/bta…☆20Updated 4 months ago
- Portable WDL workflows for IDseq production pipelines☆31Updated 2 years ago
- Extends miniwdl to run workflows on AWS Batch & EFS☆21Updated 9 months ago
- The WES API is a standard way to run and manage portable workflows.☆82Updated last month
- WDL plugin for pytest☆48Updated last year
- Central repository for the VICC metakb web application☆15Updated this week
- An opinionated Cromwell orchestration manager.☆40Updated last year
- Automatic Configuration GENerator and Installer for nextflow pipeline. This is a set of utilities to implement the best practises for th…☆8Updated 2 months ago
- Python wrapper around Nextflow.☆57Updated last year
- ☆11Updated 3 years ago
- Bioinformatics workflows developed for and used on the St. Jude Cloud project.☆34Updated this week
- A proof of concept of RNAseq pipeline☆72Updated 2 weeks ago
- This project contains the webapp sample integrated with AWS HealthOmics, which allows users such as admin and bioinformaticians to operat…☆16Updated this week
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆41Updated last year
- This guidance creates a scalable environment in AWS to prepare genomic, clinical, mutation, expression and imaging data for large-scale a…☆24Updated 7 months ago
- Nextflow Tower system☆147Updated last year
- a place for GA4GH-related wiki pages☆15Updated 7 years ago
- Parse Illumina sample sheets with Python☆49Updated 8 months ago
- ☆15Updated 4 years ago
- hgvslib provides functions to parse and compare the equivalency of variant strings described according to Human Genome Variation Society …☆18Updated last year