awslabs / aws-parallelcluster-pipeline-gatk-quick-startLinks
☆15Updated 5 years ago
Alternatives and similar repositories for aws-parallelcluster-pipeline-gatk-quick-start
Users that are interested in aws-parallelcluster-pipeline-gatk-quick-start are comparing it to the libraries listed below
Sorting:
- ☆11Updated 3 years ago
- Linter rules for Nextflow DSL scripts☆34Updated last week
- This solution provides a framework for Next Generation Sequencing (NGS) genomics secondary-analysis pipelines using AWS Step Functions an…☆39Updated last year
- ☆75Updated 3 weeks ago
- This project contains the webapp sample integrated with AWS HealthOmics, which allows users such as admin and bioinformaticians to operat…☆19Updated 7 months ago
- ☆33Updated last week
- A set of command line tools based on R and JavaScript.☆18Updated 5 years ago
- A cloud-based deployment of the 10x Genomics Cell Ranger software☆14Updated 5 years ago
- ☆147Updated last year
- Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…☆69Updated 2 months ago
- AWS Quick Start Team☆24Updated 8 months ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 7 years ago
- Portable WDL workflows for IDseq production pipelines☆32Updated 3 years ago
- An interactive learning resource for next-generation sequencing (NGS) techniques☆29Updated 6 years ago
- Tools for next-generation sequencing analysis☆88Updated 6 years ago
- Annotating principal splice isoforms☆14Updated 8 months ago
- Bio-dockers: dockerized bioinformatic tools☆32Updated 5 months ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- Human Pangenome Reference Consortium - HG002 Data Freeze (v1.0)☆80Updated 3 years ago
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 4 years ago
- Detect somatic variants from tumor and normal WGS/WXS data☆18Updated last month
- Workflow: Convert CONTROL-freec output to GISTIC2☆10Updated 4 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated last year
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 2 years ago
- Workflows used for processing whole genome sequence data + germline variant calling. This Repository has been archived, please visit the …☆28Updated 4 years ago
- Bioinformatics workflows developed for and used on the St. Jude Cloud project.☆36Updated this week
- Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis☆23Updated 2 months ago
- A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data☆12Updated 2 years ago
- Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9…☆22Updated 2 months ago