Alternatives and similar repositories for DockQ:

Users that are interested in DockQ are comparing it to the libraries listed below

• patrickbryant1 / Umol
  Protein-ligand structure prediction
  ☆210Updated 7 months ago
• zrqiao / NeuralPLexer
  NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model
  ☆280Updated 10 months ago
• RosettaCommons / RFDesign
  Protein hallucination and inpainting with RoseTTAFold
  ☆253Updated last year
• luwei0917 / DynamicBind
  repo for DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model
  ☆227Updated 10 months ago
• RosettaCommons / protein_generator
  Joint sequence and structure generation with RoseTTAFold sequence space diffusion
  ☆303Updated 4 months ago
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆128Updated last month
• JeffSHF / ColabDock
  Code for ColabDock paper
  ☆136Updated 4 months ago
• HWaymentSteele / AF_Cluster
  Predict multiple protein conformations using sequence clustering and AlphaFold2.
  ☆148Updated 2 weeks ago
• nrbennet / dl_binder_design
  ☆290Updated 7 months ago
• dauparas / LigandMPNN
  ☆290Updated last month
• guyujun / pyrosetta-basic
  ☆156Updated 3 years ago
• Merck / BioPhi
  BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…
  ☆174Updated 5 months ago
• rifdock / rifdock
  Rifdock Library for Conformational Search
  ☆151Updated 9 months ago
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆97Updated 2 years ago
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆149Updated 3 weeks ago
• LPDI-EPFL / masif_seed
  Masif seed paper repository
  ☆145Updated last year
• jertubiana / ScanNet
  ☆121Updated last year
• ProteinDesignLab / protpardelle
  Diffusion-based all-atom protein generative model.
  ☆183Updated 3 weeks ago
• uw-ipd / RoseTTAFold2
  ☆190Updated 3 months ago
• RosettaCommons / DeepAb
  Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.
  ☆158Updated 2 years ago
• ikalvet / heme_binder_diffusion
  ☆112Updated 5 months ago
• CAODH / SurfDock
  SurfDock is a Surface-Informed Diffusion Generative Model for Reliable and Accurate Protein-ligand Complex Prediction
  ☆150Updated 2 months ago
• plinder-org / plinder
  Protein Ligand INteraction Dataset and Evaluation Resource
  ☆206Updated 3 weeks ago
• fhalab / MLDE
  A machine-learning package for navigating combinatorial protein fitness landscapes.
  ☆122Updated 3 years ago
• zaixizhang / PocketGen
  PocketGen (Nature Machine Intelligence 24): Generating Full-Atom Ligand-Binding Protein Pockets
  ☆171Updated this week
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆192Updated last year
• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆109Updated last year
• patrickbryant1 / EvoBind
  In silico directed evolution of peptide binders with AlphaFold
  ☆148Updated last month
• zhanghaicang / carbonmatrix_public
  ☆110Updated 4 months ago