🔗 PyTorch implementation of the Parallelized Natural Extension Reference Frame algorithm
☆21Sep 8, 2018Updated 8 years ago
Alternatives and similar repositories for pnerf-pytorch
Users that are interested in pnerf-pytorch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆35Jul 22, 2019Updated 7 years ago
- Python/TF1 implementation of DeepAccNet (https://www.biorxiv.org/content/10.1101/2020.07.17.209643v1)☆10Sep 2, 2020Updated 6 years ago
- Semantic Segmentor for Protein Structures.☆11Dec 20, 2021Updated 4 years ago
- PyTorch library of layers acting on protein representations☆119Jun 30, 2024Updated 2 years ago
- Massively-Parallel Natural Extension of Reference Frame☆35Jan 18, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- An efficient method for the conversion from internal to Cartesian coordinates that utilizes the platform-agnostic JAX Python library.☆21Jun 12, 2024Updated 2 years ago
- A simple Python library to generate model peptides☆104Nov 29, 2020Updated 5 years ago
- Julia tools for reading Crystallographic Information Framework (CIF) files and dictionaries☆15Apr 10, 2026Updated 5 months ago
- Building more accurate protein structures from backbone torsion angles☆16Mar 21, 2025Updated last year
- OpenSMILES parser in Julia☆26Oct 29, 2022Updated 3 years ago
- PSIPRED Protein Secondary Structure Predictor☆60Jul 3, 2025Updated last year
- A simple implementation of replica exchange MD simulations for OpenMM.☆27Jul 19, 2021Updated 5 years ago
- The standalone version of SPOT-1D-Single available for public use for research purposes.☆24May 19, 2024Updated 2 years ago
- ☆16Jan 10, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Voronota is a software tool for analyzing three-dimensional structures of biological macromolecules using the Voronoi diagram of atomic b…☆41Sep 4, 2026Updated 3 weeks ago
- Source code for MutPred2.0☆16Mar 27, 2025Updated last year
- Pytorch code for Sampling in Combinatorial Spaces with SurVAE Flow Augmented MCMC☆11Mar 1, 2021Updated 5 years ago
- The implementation of "The Kanerva Machine" with Pytorch and Pyro☆12Jun 14, 2018Updated 8 years ago
- spiral engraving effect☆20Aug 7, 2026Updated last month
- PlaNet: Learning Latent Dynamics for Planning from Pixels☆10Feb 13, 2020Updated 6 years ago
- cfid: R package for identifying counterfactuals.☆11Dec 11, 2025Updated 9 months ago
- Utilities for working with Mole units for the Julia language☆17Jan 13, 2022Updated 4 years ago
- Ancestral protein sequence reconstruction using a tree-structured Ornstein-Uhlenbeck variational autoencoder☆18Aug 3, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Documentation, guidelines, and policy on contributing to all BioJulia repositories☆17Updated this week
- ☆13Nov 29, 2017Updated 8 years ago
- Extended XYZ read/write support for Julia☆18Jun 17, 2026Updated 3 months ago
- Julia interface to ViennaRNA for RNA structure prediction and analysis☆23Apr 16, 2024Updated 2 years ago
- A simple library for handling NMR data in Julia☆15Sep 2, 2026Updated 3 weeks ago
- Repository for "Learning action-oriented models through active inference"☆12May 11, 2020Updated 6 years ago
- Deep convolutional networks for fold recognition☆22Nov 8, 2019Updated 6 years ago
- Graph Inference on MoLEcular Topology☆26Mar 25, 2023Updated 3 years ago
- Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing☆23Aug 5, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆94Dec 6, 2021Updated 4 years ago
- Transferable Double Exponential non-bonded potential for condensed phase simulations of small molecules☆26Jul 17, 2026Updated 2 months ago
- Tools to build coarse grained models and perform simulations with OpenMM☆24Aug 12, 2026Updated last month
- Code in support of the paper Continuous Mixtures of Tractable Probabilistic Models☆12Oct 12, 2024Updated last year
- Tool to compute molecular Solvent Excluded Surface meshes on the GPU using CUDA☆18Jun 30, 2026Updated 2 months ago
- Code for working with differential forms in context of control theory on basis of sympy☆14Feb 25, 2019Updated 7 years ago
- Resources for Learning Cheminformatics with the RDKit☆19Apr 7, 2019Updated 7 years ago