Alternatives and similar repositories for pnerf-pytorch

Users that are interested in pnerf-pytorch are comparing it to the libraries listed below

• aqlaboratory / pnerf
  ☆36Updated 6 years ago
• EleutherAI / mp_nerf
  Massively-Parallel Natural Extension of Reference Frame
  ☆32Updated 2 years ago
• psipred / cgdms
  Differentiable molecular simulation of proteins with a coarse-grained potential
  ☆56Updated 6 months ago
• PeptoneLtd / nerfax
  An efficient method for the conversion from internal to Cartesian coordinates that utilizes the platform-agnostic JAX Python library.
  ☆18Updated last year
• debbiemarkslab / NEMO
  Learning protein structure with a differentiable simulator
  ☆27Updated 6 years ago
• lamoureux-lab / TorchProteinLibrary
  PyTorch library of layers acting on protein representations
  ☆119Updated last year
• ba-lab / pdnet
  PDNET: A fully open-source framework for deep learning protein real-valued distances
  ☆36Updated 4 years ago
• pagnani / ArDCA.jl
  Autoregressive networks for protein
  ☆38Updated 7 months ago
• ElArkk / jax-unirep
  Reimplementation of the UniRep protein featurization model.
  ☆108Updated last year
• uw-ipd / tmol
  TMol
  ☆47Updated last week
• pagnani / PlmDCA.jl
  Pseudo Likelihood Maximization for protein in Julia
  ☆51Updated 5 months ago
• KULL-Centre / BME
  Integrating Molecular Simulation and Experimental Data
  ☆24Updated 4 years ago
• ur-whitelab / wazy
  Bayesian Optimization with Pretrained Protein Sequence Models
  ☆56Updated last year
• samsinai / FLEXS
  Fitness landscape exploration sandbox for biological sequence design.
  ☆168Updated 2 years ago
• psipred / DMPfold
  De novo protein structure prediction using iteratively predicted structural constraints
  ☆60Updated 3 years ago
• maccallumlab / BoltzmannGenerator
  An implementation of Boltzmann generators using pytorch.
  ☆11Updated 5 years ago
• psipred / protein-vae
  Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies
  ☆89Updated 2 years ago
• wells-wood-research / alphafold2-multiprocessing
  Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing
  ☆23Updated 4 years ago
• wells-wood-research / PDBench
  PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.
  ☆30Updated 2 years ago
• whitead / minimalaf
  Minimal AlphaFold
  ☆54Updated last year
• noegroup / paper_boltzmann_generators
  ☆90Updated 3 years ago
• greener-group / GB99dms
  The GB99dms implicit solvent force field for proteins, plus scripts and data
  ☆24Updated 3 weeks ago
• risilab / cormorant
  Codebase for Cormorant Neural Networks
  ☆60Updated 3 years ago
• john-bradshaw / synthesis-dags
  Code for our paper "Barking up the right tree: an approach to search over molecule synthesis DAGs"
  ☆47Updated last year
• lamoureux-lab / 3DCNN_MQA
  Deep convolutional networks for fold recognition
  ☆22Updated 5 years ago
• Genentech / walk-jump
  Official repository for discrete Walk-Jump Sampling (dWJS)
  ☆53Updated last year
• MJ10 / BioSeq-GFN-AL
  Code for "Biological Sequence Design with GFlowNets", 2022
  ☆74Updated 2 years ago
• prescient-design / holo-bench
  Benchmark for Biophysical Sequence Optimization Algorithms
  ☆20Updated 4 months ago
• mdtraj / nma
  Normal Mode Analysis for Macromolecules
  ☆17Updated 8 years ago
• hiranumn / DeepAccNet-TF
  Python/TF1 implementation of DeepAccNet (https://www.biorxiv.org/content/10.1101/2020.07.17.209643v1)
  ☆10Updated 5 years ago