☆12May 21, 2026Updated 5 months ago
Alternatives and similar repositories for Freyja-barcodes
Users that are interested in Freyja-barcodes are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment☆20Nov 12, 2025Updated 11 months ago
- ☆24Sep 3, 2026Updated last month
- MIRA: Portable, Interactive Application for High-Quality Influenza, SARS-CoV-2 and RSV Genome Assembly, Annotation, and Curation☆25Oct 7, 2026Updated 3 weeks ago
- ☆21Apr 2, 2025Updated last year
- Influenza genome analysis Nextflow workflow☆28Jun 3, 2026Updated 4 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Scripts and reference files to type Group A Streptococcus☆11Aug 31, 2026Updated last month
- Nextflow pipeline for bacterial clustering and linkage detection based on core genome analysis, designed to support genomic surveillance …☆12Jul 2, 2026Updated 3 months ago
- In silico Penicillin Binding Protein (PBP) typer for Streptococcus pneumoniae assemblies☆10Aug 6, 2024Updated 2 years ago
- Bacterial surveillance pipeline.☆30Sep 30, 2026Updated 3 weeks ago
- Use tbl2asn forever by pretending that it's still 2019☆12Jan 24, 2020Updated 6 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆58Mar 23, 2026Updated 7 months ago
- Databases for wg/cgMLST analysis with the PN2.0 software☆10May 7, 2026Updated 5 months ago
- ☆13May 29, 2026Updated 5 months ago
- UPHL's Reference Free Pipeline☆29Oct 9, 2026Updated 2 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Pipeline for creating comprehensive viral reference sets.☆12Sep 17, 2026Updated last month
- Benchmark and toy datasets☆12Jan 8, 2025Updated last year
- app to collapse Pango lineages for reporting☆14Oct 2, 2026Updated 3 weeks ago
- VarSkip multiplex PCR designs for SARS-CoV-2 sequencing☆15Oct 9, 2026Updated 3 weeks ago
- Standard database for the TBProfiler tool☆31Jun 23, 2026Updated 4 months ago
- Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.☆14Jan 6, 2023Updated 3 years ago
- catalog for long-read sequencing tools☆32Feb 14, 2023Updated 3 years ago
- Nextflow workflow template repository☆20Jul 29, 2026Updated 3 months ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health con…☆71Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆44Oct 7, 2026Updated 3 weeks ago
- Depth-weighted De-Mixing☆134Updated this week
- JUNIPER: Large-Scale Outbreak Reconstruction☆14Mar 26, 2025Updated last year
- Collection template and associated materials for SARS-CoV-2 metadata☆37Oct 27, 2023Updated 3 years ago
- SC2 variant detection and composition pipeline☆19Jun 12, 2026Updated 4 months ago
- ☆23Sep 22, 2026Updated last month
- FluMut is a command-line tool to find markers of interest in H5N1 avian influenza viruses.☆15Oct 19, 2026Updated last week
- Official place for proposals and details around monkeypox virus lineage designations☆23Jul 7, 2026Updated 3 months ago
- Datasets for https://github.com/nextstrain/nextclade☆47Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆16Mar 12, 2026Updated 7 months ago
- Batch processing using joblib including tqdm progress bars☆20Dec 29, 2021Updated 4 years ago
- MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates☆96Jul 23, 2026Updated 3 months ago
- StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.☆19Aug 28, 2026Updated 2 months ago
- ☆22Jun 1, 2026Updated 4 months ago
- Utility to alias and dealias pango lineages☆23Dec 18, 2023Updated 2 years ago
- An SRA tool that takes as input local fastq file from a clinical infection sample, identifies and removes any significant human read, and…☆58Jul 24, 2025Updated last year