ajinkya-kulkarni / PySpatialHistologyAnalysis
Package using StarDist and Python that performs object detection and spatial analysis on H&E images
β3Updated 2 months ago
Alternatives and similar repositories for PySpatialHistologyAnalysis:
Users that are interested in PySpatialHistologyAnalysis are comparing it to the libraries listed below
- π¬ Code-free deep segmentation for computational pathologyβ53Updated 7 months ago
- Transfer trained StarDist models across imaging modalitiesβ1Updated 3 months ago
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/β23Updated last month
- β24Updated 4 months ago
- QuPath extension for Cellsparseβ17Updated last month
- Pipeline for computational pathologyβ34Updated last year
- β40Updated 3 years ago
- β13Updated 8 months ago
- Piecewise alignment for layers of mosaicsβ21Updated last month
- A neural network software for using Molecular labelling to improve pathological annotation of H and E tissuesβ29Updated last year
- GPU-accelerated image processing in QuPathβ15Updated 3 years ago
- π₯ π Blazingly fast pipeline for patch-based classification in whole slide imagesβ64Updated 6 months ago
- β15Updated 2 years ago
- An optimized pipeline for working with Whole Slide Image (WSI) data in Tensorflowβ15Updated 3 years ago
- Interactive deep learning whole-cell segmentation and thresholding using partial annotationsβ35Updated this week
- Re-stained whole slide image alignmentβ32Updated last year
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflowβ27Updated 5 months ago
- Codebase for "A Foundation Model for Cell Segmentation"β61Updated 5 months ago
- Hands-on Sessions 1 and 2 at the Building Interpretable AI for Digital Pathology AMLD workshop 2021β21Updated 3 years ago
- Quality control of whole-slide images through multi-class semantic segmentation of artifactsβ30Updated 11 months ago
- β27Updated 2 months ago
- Python 3 library for the augmentation & normalization of H&E imagesβ51Updated 2 years ago
- The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell β¦β18Updated last year
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUmaβ¦β49Updated 2 months ago
- NuSeT: A Deep Learning Tool for Reliably Separating and Analyzing Crowded Cellsβ20Updated 4 years ago
- An open-source digital pathology based rapid image annotation toolβ75Updated this week
- simple package for augmentation of n-dimensional arraysβ32Updated last year
- version 1 scripts for CODAβ41Updated 8 months ago
- Whole Slide image (WSI) conversion for brightfield histology imagesβ33Updated 3 weeks ago
- β10Updated 4 years ago