☆12Aug 20, 2025Updated last year
Alternatives and similar repositories for SAI-10k-calc
Users that are interested in SAI-10k-calc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆21Jul 28, 2025Updated last year
- ☆28Sep 18, 2026Updated last month
- A Mendelian approach to variant effect prediction built in keras☆22Aug 22, 2026Updated 2 months ago
- ☆19Mar 14, 2022Updated 4 years ago
- A deletion and duplication caller from NGS paired-end data.☆14Aug 22, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆42Jul 3, 2025Updated last year
- CADD-SV – a framework to score the effect of structural variants☆23Sep 17, 2026Updated last month
- SANEFALCON (Single reAds Nucleosome-basEd FetAL fraCtiON): Calculating the fetal fraction for noninvasive prenatal testing based on genom…☆14Jun 5, 2020Updated 6 years ago
- do some exercise☆15Dec 2, 2025Updated 10 months ago
- Tissue-specific variant effect predictions on splicing☆44May 23, 2023Updated 3 years ago
- A deep learning approach to de novo variant calling in next generation sequencing data☆21Jun 19, 2026Updated 4 months ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆31Feb 20, 2021Updated 5 years ago
- Interactive Protein Sequence VIsualization/Viewer - Interactive Circos☆11Jun 5, 2026Updated 4 months ago
- Pangolin is a deep-learning method for predicting splice site strengths.☆97Jun 17, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A multi-task neural network for predicting perturbation responses to Alternative Polyadenylation usage levels☆11May 18, 2023Updated 3 years ago
- Complex structural variant detection from WGS data☆32Oct 7, 2026Updated 2 weeks ago
- A Docker image for the CLIFF geolocation software.☆10Jun 12, 2018Updated 8 years ago
- Contains the code from "Learning the Sequence Determinants of Alternative Splicing from Millions of Random Sequences"☆35May 10, 2016Updated 10 years ago
- ☆17Oct 17, 2024Updated 2 years ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆12Nov 15, 2024Updated last year
- DeepMosaic is a deep-learning-based mosaic single nucleotide classification tool without the need of matched control information.☆58May 21, 2026Updated 5 months ago
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated 2 years ago
- Tool to find regions of homozygosity (ROHs) from sequencing data.☆37Jun 17, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆42May 19, 2026Updated 5 months ago
- openASO is a project designed to identify regulatory regions of an RNA that can be targeted by antisense oligonucleotides.☆15Sep 30, 2021Updated 5 years ago
- ☆19May 22, 2025Updated last year
- exploratory scripts for clustering ccs amplicon data☆11Feb 2, 2021Updated 5 years ago
- ☆16Sep 1, 2023Updated 3 years ago
- NFL Drafts visualization☆14Mar 23, 2013Updated 13 years ago
- A fast, memory-efficient variant effect predictor written in Rust: a from-scratch reimplementation of the Ensembl Variant Effect Predicto…☆47Updated this week
- Sample Contamination Estimate from VCF☆21Updated this week
- A collection of Jupyter notebooks.☆11Oct 31, 2017Updated 8 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Merge and compare structural variants across callers, samples, and platforms. Standardizes BND-heavy output from GRIDSS, SvABA, Sniffles,…☆51Sep 23, 2026Updated last month
- Annotate non-coding regulatory vars using our GREEN-DB, prediction scores, conservation and pop AF☆21Jun 13, 2025Updated last year
- POSTRE: Prediction Of STRuctural variant Effects☆31Sep 3, 2026Updated last month
- Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes☆76Oct 15, 2026Updated last week
- A Python library for performing DNA fragment-analysis☆14Aug 28, 2018Updated 8 years ago
- Functions for handling RNA-seq files and formats as input and output for scrattch functions.☆11Aug 20, 2025Updated last year
- Functions to extract information from Oxford Nanopore sequencing data and alignments☆12Sep 28, 2026Updated 3 weeks ago