hadim / pytrackmate
Import Trackmate XML files in Python as Pandas dataframe
☆9Updated last year
Alternatives and similar repositories for pytrackmate:
Users that are interested in pytrackmate are comparing it to the libraries listed below
- ☆29Updated 9 months ago
- ☆44Updated 3 months ago
- A minimal Python package for reading OME-Zarr (meta)data☆13Updated last week
- Basic example of using OME-Zarr in a Nextflow pipeline☆15Updated 2 months ago
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- ☆22Updated 3 years ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆48Updated 2 months ago
- A Board Game to teach co-localization analysis☆12Updated 2 months ago
- Track and lineage visualization with btrack and Napari☆44Updated 2 months ago
- StarDist plugin for napari☆36Updated 4 months ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated last year
- A 3D interactivity toolbox for napari☆32Updated last month
- native Python dataclasses for the OME data model☆55Updated last week
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆15Updated this week
- Visualizing feature measurements on label images in napari☆10Updated 5 months ago
- A napari plugin for zarr backed OME-NGFF images☆32Updated last week
- Browse your OMERO database from within napari.☆35Updated this week
- Particle tracking by solving linear assignment problem.☆49Updated 2 weeks ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated last month
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated last month
- A module with convenience functions for writing Python code that interacts with OMERO.☆39Updated 2 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆53Updated 2 years ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated last year
- ☆16Updated 2 years ago
- Place to discuss the future design of a universal microscope hardware interface☆15Updated 3 years ago
- Deconvolution of widefield microscopy images and generation of point spread functions☆43Updated this week
- Lectures for a napari training course☆50Updated last year
- Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated last month
- ☆68Updated last month
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆25Updated 7 months ago