Alternatives and similar repositories for pytrackmate

Users that are interested in pytrackmate are comparing it to the libraries listed below

• guiwitz / napari_demo
  ☆23Updated 4 years ago
• napari-threedee / napari-threedee
  A 3D interactivity toolbox for napari
  ☆37Updated 5 months ago
• guiwitz / microfilm
  Creating figures and animations for multi-channel images with a focus on microscopy.
  ☆78Updated 11 months ago
• 4DNucleome / PartSeg
  Tool for segmentation in bioimaging
  ☆34Updated this week
• imaris / ImarisWriter
  ☆38Updated last year
• lukasz-migas / napari-plot
  1d plotting in napari-based canvas.
  ☆25Updated last week
• hanjinliu / impy
  Speed up coding/extending image analysis in Python.
  ☆35Updated 2 months ago
• lowe-lab-ucl / arboretum
  Track and lineage visualization with btrack and Napari
  ☆45Updated 2 months ago
• pyapp-kit / ndv
  Simple, fast-loading, n-dimensional array viewer with minimal dependencies.
  ☆87Updated last week
• transformify-plugins / segmentify
  Python image segmentation plugin
  ☆31Updated 4 years ago
• nvladimus / npy2bdv
  Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.
  ☆34Updated last year
• yfukai / laptrack
  Particle tracking by solving linear assignment problem.
  ☆60Updated last week
• NEUBIAS / training-resources
  Resources for teaching/preparing to teach bioimage analysis
  ☆58Updated 2 weeks ago
• ome / napari-ome-zarr
  A napari plugin for zarr backed OME-NGFF images
  ☆42Updated last week
• chanzuckerberg / napari-hub
  Discover, install, and share napari plugins
  ☆54Updated last month
• COBA-NIH / MicroscopyForBeginnersReferenceGuide
  A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation
  ☆29Updated 3 weeks ago
• rosalindfranklininstitute / RedLionfish
  ☆36Updated last year
• hinderling / napari_pixel_classifier
  An Ilastik-like interactive pixel classifier.
  ☆16Updated last year
• tlambert03 / imarispy
  Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer
  ☆12Updated 4 years ago
• apeer-micro / apeer-ometiff-library
  Easily read and write ome-tiff images in python
  ☆28Updated last year
• janelia-cellmap / fibsem-tools
  Tools for handling FIB-SEM data and annotations
  ☆22Updated 8 months ago
• tlambert03 / ome-types
  native Python dataclasses for the OME data model
  ☆64Updated last week
• m-albert / MVRegFus
  Python module for registering and fusing multi-view microscopy data
  ☆24Updated 9 months ago
• jni / affinder
  Quickly find the affine matrix mapping one image to another using manual correspondence points annotation
  ☆22Updated 4 months ago
• haesleinhuepf / stackview
  Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets
  ☆174Updated 6 months ago
• HenriquesLab / NanoJ-Core
  Core functionality of NanoJ
  ☆17Updated last year
• napari / cookiecutter-napari-plugin
  Cookiecutter for napari plugins
  ☆71Updated last year
• cmongis / psfj
  PSFj - Know your microscope fluorescence
  ☆23Updated 5 years ago
• tlambert03 / pycudadecon
  Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy
  ☆71Updated last week
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆87Updated last week