Alternatives and similar repositories for pytrackmate

Users that are interested in pytrackmate are comparing it to the libraries listed below

• lowe-lab-ucl / arboretum
  Track and lineage visualization with btrack and Napari
  ☆45Updated 4 months ago
• hanjinliu / impy
  Speed up coding/extending image analysis in Python.
  ☆37Updated 2 weeks ago
• marrlab / BaSiC
  A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images
  ☆64Updated 10 months ago
• lukasz-migas / napari-plot
  1d plotting in napari-based canvas.
  ☆25Updated 2 weeks ago
• janelia-cellmap / fibsem-tools
  Tools for handling FIB-SEM data and annotations
  ☆22Updated 10 months ago
• rosalindfranklininstitute / RedLionfish
  ☆36Updated last year
• transformify-plugins / segmentify
  Python image segmentation plugin
  ☆31Updated 5 years ago
• 4DNucleome / PartSeg
  Tool for segmentation in bioimaging
  ☆35Updated this week
• tlambert03 / ome-types
  native Python dataclasses for the OME data model
  ☆65Updated this week
• napari-threedee / napari-threedee
  A 3D interactivity toolbox for napari
  ☆37Updated 7 months ago
• tlambert03 / pycudadecon
  Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy
  ☆71Updated this week
• ome / napari-ome-zarr
  A napari plugin for zarr backed OME-NGFF images
  ☆43Updated 2 weeks ago
• fractal-analytics-platform / fractal-tasks-core
  Main tasks for the Fractal analytics platform
  ☆23Updated this week
• flevet / SR-Tesseler
  ☆13Updated 5 years ago
• czbiohub-sf / iohub
  Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata
  ☆48Updated last week
• haesleinhuepf / stackview
  Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets
  ☆177Updated 3 weeks ago
• Open-Science-Tools / nd2reader
  Pure Python library for reading NIS Elements ND2 images and metadata
  ☆48Updated last year
• AndrewGYork / high_na_single_objective_lightsheet
  Parts list and build instructions for our high-numerical-aperture lightsheet. Read the publication here: https://andrewgyork.github.io/hi…
  ☆22Updated last year
• guiwitz / napari_demo
  ☆23Updated 4 years ago
• tlambert03 / imarispy
  Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer
  ☆12Updated 4 years ago
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆90Updated 2 weeks ago
• guiwitz / microfilm
  Creating figures and animations for multi-channel images with a focus on microscopy.
  ☆79Updated last year
• tlambert03 / napari-ndtiffs
  A napari plugin to load & deskew folders of lattice light sheet TIFFs
  ☆13Updated last month
• COBA-NIH / MicroscopyForBeginnersReferenceGuide
  A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation
  ☆29Updated 2 months ago
• mobie / mobie-viewer-fiji
  ☆41Updated last week
• tlambert03 / nd2
  Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction
  ☆76Updated this week
• yfukai / laptrack
  Particle tracking by solving linear assignment problem.
  ☆61Updated last week
• NEUBIAS / training-resources
  Resources for teaching/preparing to teach bioimage analysis
  ☆58Updated last week
• haesleinhuepf / napari-plot-profile
  ☆20Updated 9 months ago
• chanzuckerberg / napari-hub
  Discover, install, and share napari plugins
  ☆54Updated last week