hadim / pytrackmateLinks
Import Trackmate XML files in Python as Pandas dataframe
☆11Updated 11 months ago
Alternatives and similar repositories for pytrackmate
Users that are interested in pytrackmate are comparing it to the libraries listed below
Sorting:
- Speed up coding/extending image analysis in Python.☆37Updated 2 weeks ago
- A 3D interactivity toolbox for napari☆37Updated 7 months ago
- 1d plotting in napari-based canvas.☆25Updated 2 weeks ago
- Track and lineage visualization with btrack and Napari☆45Updated 4 months ago
- Tool for segmentation in bioimaging☆35Updated this week
- ☆36Updated last year
- Python module for registering and fusing multi-view microscopy data☆24Updated 11 months ago
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆88Updated this week
- native Python dataclasses for the OME data model☆65Updated last week
- Python image segmentation plugin☆31Updated 5 years ago
- ☆23Updated 4 years ago
- A napari plugin for zarr backed OME-NGFF images☆43Updated 3 weeks ago
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆48Updated last week
- Gamified image segmentation quality estimation☆19Updated 9 months ago
- PSFj - Know your microscope fluorescence☆24Updated 5 years ago
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆177Updated 3 weeks ago
- Resources for teaching/preparing to teach bioimage analysis☆58Updated last week
- Quickly find the affine matrix mapping one image to another using manual correspondence points annotation☆22Updated 6 months ago
- An Ilastik-like interactive pixel classifier.☆16Updated last year
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆29Updated 2 months ago
- Tools for handling FIB-SEM data and annotations☆22Updated 10 months ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Updated last year
- Easily read and write ome-tiff images in python☆28Updated last year
- A napari plugin for clustering objects according to their properties.☆90Updated 2 weeks ago
- Napari gaming☆17Updated 4 years ago
- Creating figures and animations for multi-channel images with a focus on microscopy.☆79Updated last year
- ☆51Updated 9 months ago
- Cookiecutter for napari plugins☆71Updated last year
- ☆13Updated 5 years ago
- Process and analyze surfaces using vedo in napari.☆25Updated last year