Alternatives and similar repositories for pytrackmate

Users that are interested in pytrackmate are comparing it to the libraries listed below

• lowe-lab-ucl / arboretum
  Track and lineage visualization with btrack and Napari
  ☆45Updated 3 months ago
• 4DNucleome / PartSeg
  Tool for segmentation in bioimaging
  ☆35Updated last week
• napari-threedee / napari-threedee
  A 3D interactivity toolbox for napari
  ☆37Updated 6 months ago
• hanjinliu / impy
  Speed up coding/extending image analysis in Python.
  ☆35Updated last month
• guiwitz / napari_demo
  ☆23Updated 4 years ago
• tlambert03 / ome-types
  native Python dataclasses for the OME data model
  ☆65Updated last week
• NEUBIAS / training-resources
  Resources for teaching/preparing to teach bioimage analysis
  ☆58Updated last week
• ome / napari-ome-zarr
  A napari plugin for zarr backed OME-NGFF images
  ☆42Updated last month
• apeer-micro / apeer-ometiff-library
  Easily read and write ome-tiff images in python
  ☆28Updated last year
• rosalindfranklininstitute / RedLionfish
  ☆36Updated last year
• lukasz-migas / napari-plot
  1d plotting in napari-based canvas.
  ☆25Updated last week
• tlambert03 / pycudadecon
  Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy
  ☆71Updated last week
• guiwitz / microfilm
  Creating figures and animations for multi-channel images with a focus on microscopy.
  ☆79Updated last year
• haesleinhuepf / napari-plot-profile
  ☆20Updated 8 months ago
• transformify-plugins / segmentify
  Python image segmentation plugin
  ☆31Updated 5 years ago
• yfukai / laptrack
  Particle tracking by solving linear assignment problem.
  ☆61Updated last month
• tlambert03 / imarispy
  Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer
  ☆12Updated 4 years ago
• jni / affinder
  Quickly find the affine matrix mapping one image to another using manual correspondence points annotation
  ☆22Updated 5 months ago
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆89Updated last week
• cmongis / psfj
  PSFj - Know your microscope fluorescence
  ☆23Updated 5 years ago
• hinderling / napari_pixel_classifier
  An Ilastik-like interactive pixel classifier.
  ☆16Updated last year
• pyapp-kit / ndv
  Simple, fast-loading, n-dimensional array viewer with minimal dependencies.
  ☆88Updated last week
• jluethi / napari-feature-visualization
  Visualizing feature measurements on label images in napari
  ☆10Updated last year
• nvladimus / npy2bdv
  Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.
  ☆34Updated last year
• COBA-NIH / MicroscopyForBeginnersReferenceGuide
  A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation
  ☆29Updated 2 months ago
• fractal-analytics-platform / fractal-tasks-core
  Main tasks for the Fractal analytics platform
  ☆22Updated this week
• tlambert03 / napari-ndtiffs
  A napari plugin to load & deskew folders of lattice light sheet TIFFs
  ☆13Updated 2 weeks ago
• haesleinhuepf / napari-skimage-regionprops
  Feature extraction for labeled objects in images using regionprops from scikit-image
  ☆55Updated 8 months ago
• imaris / ImarisWriter
  ☆38Updated last year
• constantinpape / pybdv
  python tools for BigDataViewer
  ☆22Updated last year