Alternatives and similar repositories for PeptideGPT

Users that are interested in PeptideGPT are comparing it to the libraries listed below

• RoniGurvich / Peptriever
  Bi-Encoder approach for large-scale protein-peptide binding search
  ☆12Updated last year
• RosettaCommons / AF2_peptide_hallucination
  Code for designing binders to flexible peptides with AlphaFold2 Hallucination
  ☆27Updated last year
• WangLabforComputationalBiology / NanoBERTa-ASP
  Predicting Nanobody Binding Epitopes Based on a Pretrained RoBERTa-based Model
  ☆15Updated last year
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆32Updated 2 years ago
• WeiLab-Biology / DeepProSite
  ☆33Updated last year
• mgreenig / loopgen
  SE(3) diffusion models for generating CDR loops
  ☆10Updated last year
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆55Updated last month
• lamm-mit / ProteinDiffusionGenerator
  Generative method to design novel proteins using a diffusion model
  ☆43Updated 2 years ago
• Furman-Lab / Peptide_docking_with_AF2_and_RosettAfold
  Code and data used in https://doi.org/10.1101/2021.08.01.454656
  ☆53Updated 3 years ago
• psalveso / pyRIF
  Using Rotamer Interaction Fields from RIFGen/Dock in python
  ☆16Updated 4 years ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆51Updated 2 months ago
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆19Updated last month
• smiles724 / PeptideDesign
  ☆28Updated last month
• RosettaCommons / FvHallucinator
  ☆27Updated 2 years ago
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆43Updated 5 months ago
• Furman-Lab / PatchMAN
  ☆26Updated last week
• charlesxu90 / helm-gpt
  HELM-GPT: de novo macrocyclic peptide design using generative pre-trained transformer
  ☆26Updated last year
• tommyhuangthu / UniDesign
  Universal framework for physically based computational protein design
  ☆35Updated last year
• tianlt / deepdirect
  ☆17Updated last year
• LDeng0205 / confidence-bootstrapping
  Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.
  ☆26Updated last year
• dtischer / trdesign-motif
  Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…
  ☆16Updated 3 years ago
• ShenLab / SeqDance
  code for SeqDance/ESMDance, biophysics-informed protein language models
  ☆39Updated 4 months ago
• Huatsing-Lau / PPB-Affinity-DataPrepWorkflow
  workflow used to prepare PPB-Affinity database
  ☆26Updated 11 months ago
• luwei0917 / BindingGYM
  ☆26Updated 2 weeks ago
• CDDLeiden / PCMol
  Multi-target de novo molecular generator conditioned on AlphaFold's latent protein embeddings.
  ☆66Updated 4 months ago
• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆33Updated 9 months ago
• oxpig / kasearch
  KA-Search: Rapid and exhaustive sequence identity search of known antibodies
  ☆22Updated last year
• bytedance / PXMeter
  Structural Quality Assessment for Biomolecular Structure Prediction Models
  ☆38Updated last week
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆22Updated last year
• bigict / ProDESIGN-LE
  An accurate and efficient protein sequence design approach
  ☆24Updated 4 months ago