Implementation of CycPeptMP, an accurate and efficient model for predicting the membrane permeability of cyclic peptides
☆28May 10, 2025Updated 10 months ago
Alternatives and similar repositories for cycpeptmp
Users that are interested in cycpeptmp are comparing it to the libraries listed below
Sorting:
- Cyclic-peptide - protein complexes benchmark and associated scripts and data☆14Aug 31, 2024Updated last year
- Tool to design cyclic peptides that mimic proteins and target their binding partners.☆17Jul 9, 2024Updated last year
- Making Protein folding accessible to all!☆25Jan 11, 2024Updated 2 years ago
- Introduction to cyclic peptide simulations and our group's protocols.☆16Sep 21, 2023Updated 2 years ago
- ☆63Jan 23, 2026Updated last month
- List of papers about Peptide research using Deep Learning☆37Feb 27, 2026Updated last week
- Multi_CycGT: A DL-Based Multimodal Model for Membrane Permeability Prediction of Cyclic Peptides☆19Dec 24, 2024Updated last year
- ☆14Nov 20, 2024Updated last year
- ☆37Aug 28, 2023Updated 2 years ago
- PepFun 2.0: improved protocols for the analysis of natural and modified peptides☆27Jul 7, 2023Updated 2 years ago
- ☆27Mar 21, 2025Updated 11 months ago
- This script makes a cyclic peptide or cyclic nucleotide topology file for GROMACS out of (specially prepared) linear molecule topology fi…☆14Nov 24, 2020Updated 5 years ago
- Collection of tools to calculate properties of natural or synthetic peptides and proteins.☆58Feb 25, 2026Updated last week
- ☆38Updated this week
- In silico directed evolution of peptide binders with AlphaFold☆261Jan 5, 2026Updated 2 months ago
- Transformer Based Language Model for Peptide Property Prediction☆50Aug 2, 2024Updated last year
- ☆39Apr 30, 2024Updated last year
- Official repository for DiffPepBuilder and DiffPepDock tools☆119Oct 24, 2025Updated 4 months ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆33Aug 10, 2023Updated 2 years ago
- CREMP: Conformer-Rotamer Ensembles of Macrocyclic Peptides for Machine Learning☆20Aug 13, 2024Updated last year
- ☆13Dec 14, 2023Updated 2 years ago
- A deep learning model to predict anticancer peptides.☆24Jul 10, 2019Updated 6 years ago
- Python package for the analysis of natural and modified peptides using a set of modules to study their sequences☆49Nov 27, 2025Updated 3 months ago
- Code for peptide ligand design with machine learning models.☆31Dec 8, 2024Updated last year
- PROTACable is an end-to-end in-silico design toolkit for novel PROTACs☆29Jun 3, 2024Updated last year
- ☆12Oct 9, 2024Updated last year
- Rapid construction of chemical pipelines in interactive notebooks and cli usage☆13Sep 27, 2024Updated last year
- Peptide optimization with Machine Learning☆78Dec 9, 2022Updated 3 years ago
- ☆35Jan 26, 2026Updated last month
- Official implementation of SketchMol.☆32Feb 14, 2025Updated last year
- Bi-Encoder approach for large-scale protein-peptide binding search☆12Jun 14, 2024Updated last year
- SmartCADD is an open-source virtual screening platform that combines deep learning, computer-aided drug design (CADD), and quantum mecha…☆30Jan 16, 2025Updated last year
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆60Feb 2, 2026Updated last month
- HELM-GPT: de novo macrocyclic peptide design using generative pre-trained transformer☆31Jul 4, 2024Updated last year
- AutoML system for building trustworthy peptide bioactivity predictors☆37Mar 2, 2026Updated last week
- Python code to run Supervised Molecular Dynamics (SuMD) simulations☆16Apr 24, 2024Updated last year
- An open-source automated peptide synthesizer based on Arduino and Python☆13Dec 19, 2025Updated 2 months ago
- EvolveX, a de novo antibody computational design pipeline.☆22Sep 18, 2025Updated 5 months ago
- Peptide Virtual Screening Pipeline☆14Jul 3, 2019Updated 6 years ago