zhangruochi / pepland
☆13Updated 3 months ago
Related projects ⓘ
Alternatives and complementary repositories for pepland
- ☆20Updated 4 months ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆25Updated 5 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆61Updated 4 months ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆23Updated 3 months ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆29Updated last year
- ☆26Updated 10 months ago
- Fitness landscapes for antibodies☆51Updated 6 months ago
- ☆35Updated last year
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆33Updated 4 months ago
- ☆43Updated 3 weeks ago
- RNA Multiple Sequence Alignment☆24Updated last year
- Transformer Based Language Model for Peptide Property Prediction☆34Updated 3 months ago
- AlphaFold-initiated replica exchange protein docking☆43Updated 2 months ago
- ☆38Updated 7 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆51Updated last year
- ☆70Updated 6 months ago
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆23Updated 4 months ago
- TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.☆47Updated 7 months ago
- Repo contains source code of the SurfaceID paper☆15Updated 8 months ago
- ☆21Updated last year
- Protein Design by Machine Learning guided Directed Evolution☆25Updated 3 months ago
- open source code for Tencent tFold☆67Updated 5 months ago
- ☆38Updated last month
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆22Updated 7 months ago
- ☆22Updated last week
- NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.☆30Updated 6 months ago
- ☆21Updated 7 months ago
- Structure-conditioned masked language modeling for protein sequence design☆58Updated 9 months ago
- Enzyme datasets used to benchmark enzyme-substrate promiscuity models☆29Updated 3 years ago