A large scale benchmark for cross-modal learning of histology and spatial expressions
☆24Oct 28, 2025Updated 10 months ago
Alternatives and similar repositories for hescape
Users that are interested in hescape are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆52May 19, 2025Updated last year
- Scalable Generation of Spatial Transcriptomics from Histology Images via Whole-Slide Flow Matching, ICML2025 (Spotlight)☆38Aug 11, 2025Updated last year
- DeepSpot: Deep learning model for predicting spatial transcriptomics from H&E histopathology images. Supports spot-level (Visium) and sin…☆99Sep 2, 2026Updated 2 weeks ago
- ☆21Oct 28, 2025Updated 10 months ago
- [PR 2025] Code for UMPIRE☆14Mar 10, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Integrating histology and spatial transcriptomics - NeurIPS 2024☆438Apr 16, 2026Updated 5 months ago
- [ICLR 2025] Stem: Gene Expression Inference from Histology Images☆54Apr 15, 2025Updated last year
- STPath: A Generative Foundation Model for Integrating Spatial Transcriptomics and Whole Slide Images☆53Jul 27, 2025Updated last year
- ☆37Jul 18, 2025Updated last year
- Dataloader for common proteomics search engine outputs into AnnData format☆14Mar 25, 2026Updated 5 months ago
- Gene Expression Prediction from Histology Images via Hypergraph Neural Networks☆18May 19, 2025Updated last year
- ☆57Mar 28, 2025Updated last year
- Code of the paper "DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images"☆15May 12, 2026Updated 4 months ago
- Anatomy-aware Spatial Imputation Graphic Network for 3D Spatial Transcriptomics☆24Jun 28, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- MorphLink: Bridging Cellular Morphological Behaviors and Molecular Dynamics in Multi-modal Spatial Omics☆18Dec 7, 2025Updated 9 months ago
- Multimodal foundation model predicting transcriptome-wide virtual spatial transcriptomics from histology.☆54Sep 4, 2026Updated 2 weeks ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆158Updated this week
- ☆17Feb 5, 2026Updated 7 months ago
- Spatial Expression-Aligned Learning to improve pathology foundation models☆49Feb 17, 2026Updated 7 months ago
- ☆62Apr 26, 2022Updated 4 years ago
- ☆14May 28, 2025Updated last year
- This is the main repository for MemBrain v2. It includes MemBrain-seg, MemBrain-pick, MemBrain-stats, and several Napari tools.☆26Jan 29, 2025Updated last year
- ☆32Apr 29, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- SPIDER: A multi-organ pathology dataset with expert annotations and pre-trained models for AI-driven research. Available on Hugging Face …☆45Apr 7, 2025Updated last year
- Midnight - Pathology foundation models trained on orders of magnitude fewer WSIs☆39Nov 22, 2025Updated 9 months ago
- ☆72Sep 16, 2025Updated last year
- Deep learning on histopathology images.☆149Sep 8, 2021Updated 5 years ago
- The source code for "High-Parameter Spatial Multi-Omics through Histology-Anchored Integration"☆39May 15, 2026Updated 4 months ago
- ☆23Jan 8, 2025Updated last year
- Stain normalization tools for histological analysis and computational pathology☆191Nov 13, 2025Updated 10 months ago
- ☆16Aug 1, 2026Updated last month
- Code for the paper: Mixed Models with Multiple Instance Learning☆22Nov 10, 2025Updated 10 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- AESTETIK: Convolutional autoencoder for learning spot representations from spatial transcriptomics and morphology data☆28Aug 18, 2026Updated last month
- Benchmarking clustering, alignment, and integration methods for spatial transcriptomics☆29Dec 19, 2024Updated last year
- GrapHist: Graph Self-Supervised Learning for Histopathology☆50Jul 12, 2026Updated 2 months ago
- Her2 Breast Cancer Project☆109Nov 27, 2022Updated 3 years ago
- Contrastive pre-training for technology-agnostic single-cell representations beyond reconstruction☆38Sep 8, 2026Updated last week
- Awesome generative spatial omics tools☆34Jul 17, 2026Updated 2 months ago
- Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024☆150Feb 22, 2025Updated last year