ZhangGroup-MITChemistry / ChromoGenLinks
☆56Updated last year
Alternatives and similar repositories for ChromoGen
Users that are interested in ChromoGen are comparing it to the libraries listed below
Sorting:
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆86Updated last month
- Computational Optimization of DNA Activity (CODA)☆67Updated 9 months ago
- ☆100Updated 2 months ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- This is the official codebase for methylGPT : a foundation model for the DNA methylome.☆50Updated 5 months ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆60Updated last month
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆65Updated last year
- Predictor of TCR-epitope interactions☆34Updated 4 months ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆75Updated 2 years ago
- ProCyon: A multimodal foundation model for protein phenotypes☆54Updated 2 months ago
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆38Updated 10 months ago
- Inference and numerics for multi-hybrid AI model architectures☆90Updated last month
- ☆97Updated 7 months ago
- This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'☆96Updated 2 years ago
- HLA-II ligand predictor.☆46Updated 2 years ago
- Protein 3D structure prediction pipeline☆95Updated this week
- ☆86Updated 2 years ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆43Updated 2 weeks ago
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"☆16Updated 4 years ago
- HLA-I ligand predictor☆43Updated 4 months ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆34Updated 3 years ago
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆28Updated 9 months ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆26Updated 3 years ago
- A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.☆188Updated this week
- RiboNN: predicting translation efficiencies from mRNA sequences☆50Updated 2 weeks ago
- ☆19Updated last year
- ☆29Updated last year
- ☆20Updated last year
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆43Updated 6 months ago