arnavmdas / epiphanyLinks
☆12Updated 2 years ago
Alternatives and similar repositories for epiphany
Users that are interested in epiphany are comparing it to the libraries listed below
Sorting:
- Notes on single-cell Hi-C technologies, tools, and data☆79Updated 7 months ago
- ☆65Updated last week
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆67Updated 6 months ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆38Updated last year
- ☆26Updated last month
- DiffDomain is a statistically sound method for detecting differential TADs between conditions☆18Updated 7 months ago
- Scripts + resources for analyzing combinatorial Hi-C data☆30Updated 5 years ago
- HiCorr: a Hi-C data bias-correction pipeline☆28Updated 2 months ago
- Genome-wide contact analysis using sklearn☆65Updated last year
- Single-cell Hi-C data analysis toolbox☆27Updated 3 years ago
- ☆35Updated 9 months ago
- ☆24Updated 4 years ago
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆43Updated last year
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph☆87Updated 8 months ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆18Updated 4 months ago
- ☆17Updated 7 months ago
- a computational tool for analyzing single cell Hi-C data☆25Updated last year
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆59Updated last year
- ☆22Updated last year
- Cooler demo using a Jupyter notebook Binder☆18Updated 4 years ago
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆74Updated 4 months ago
- ☆20Updated 9 months ago
- Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)☆17Updated 3 years ago
- A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.☆31Updated 2 years ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆68Updated last month
- Code for reproducing the Sei manuscript results☆17Updated 3 years ago
- Micro-C QC and data analysis☆16Updated last year
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆43Updated 6 months ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Updated 6 months ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆73Updated last year