ZeweiSong / FAST
FAST is an Amplicon Sequencing Toolbox v1.2
☆9Updated 6 years ago
Alternatives and similar repositories for FAST:
Users that are interested in FAST are comparing it to the libraries listed below
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- ☆26Updated last year
- Phylogenetic Organization of Metagenomic Signals (POMS)☆19Updated 2 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆30Updated last year
- Snakemake-based amplicon processing protocol for 16S and ITS sequences.☆14Updated last year
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆14Updated last year
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated 8 months ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆13Updated 3 years ago
- A Shotgun Metagenome Annotation Pipeline☆23Updated 8 years ago
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated last month
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆33Updated 4 years ago
- Speedy versions of phyloseq functions☆47Updated 11 months ago
- Workshop for NGS'18 conference, Barcelona 2018☆24Updated 6 years ago
- ☆22Updated last year
- A metatranscriptomic pipeline optimized for the study of microeukaryotes.☆15Updated 4 months ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 2 years ago
- repo for 2016 EDAMAME tutorials☆11Updated 8 years ago
- Interactive tools for metagenome visualization and binning in R☆28Updated 6 years ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆18Updated 4 years ago
- Tools for analyzing trees☆14Updated last year
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 2 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated 11 months ago
- accessory functions for processing microbial community data☆12Updated 2 years ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Updated 3 years ago
- 16S taxonomy assignment using an ecosystem-specific database.☆16Updated 2 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Updated 5 years ago