DeepSTF: Predicting transcription factor binding sites by interpretable deep neural networks combining sequence and shape
☆11Mar 16, 2023Updated 3 years ago
Alternatives and similar repositories for DeepSTF
Users that are interested in DeepSTF are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- BertSNR: an interpretable deep learning framework for single nucleotide resolution identification of transcription factor binding sites b…☆13May 27, 2025Updated last year
- 🚀 Send custom messages to Slack to notify about application status, progress, errors, health checks etc.☆13Feb 18, 2025Updated last year
- Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"☆13Apr 23, 2024Updated 2 years ago
- Speed up your research with our tool that combines Zotero and Ollama. It lets you use your own language model on your computer. Make your…☆36Mar 8, 2024Updated 2 years ago
- EasyX tutorial for BUAA Soft 2023 Summer☆16Mar 21, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆16Mar 12, 2025Updated last year
- Counterfactual Inference by Machine Learning and Attribution Models☆15Aug 24, 2023Updated 2 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- contrastive learning and pre-trained encoder for protein-ligand binding sites prediction☆37Jul 4, 2025Updated last year
- MulinforCPI: enhancing precision of compound-protein interaction prediction through novel perspectives on multi-level information integra…☆10Jun 20, 2024Updated 2 years ago
- A website for learners of 《Introduction to Algorithms》☆22Jan 31, 2024Updated 2 years ago
- anonymous github for SGSR: Beyond Social Homophily: Score-based Generative Diffusion Models for Social Recommendations☆13Sep 18, 2025Updated 10 months ago
- Continuous Estimation of Human Joint Angles From sEMG Using a Multi-Feature Temporal Convolutional Attention-Based Network☆18Dec 19, 2023Updated 2 years ago
- A simple python module for using a variety of wake models in a single wind farm optimization structure.☆11Jun 10, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆19Aug 29, 2025Updated 10 months ago
- 基于大模型构建的在线 AI 问诊的多智能体宠物医生 Agent。系统面向多种常见宠物疾病,整合并构建高质量的知识库,能够通过多轮对话实现智能化问诊。项目结合 Prompt Engineering 与 LangGraph 框架,支持用户与智能体之间的自然交互,最终为用户提供个…☆24Oct 13, 2025Updated 9 months ago
- [ACM TOIS] Multi-Behavior Recommendation with Personalized Directed Acyclic Behavior Graphs☆13Dec 6, 2024Updated last year
- ☆13Dec 5, 2024Updated last year
- ☆14Jan 17, 2025Updated last year
- Implementation of SIGIR'25 accepted paper, focusing on social denoising recommendation☆13Apr 8, 2025Updated last year
- [TOIS'24] "RecRanker: Instruction Tuning Large Language Model as Ranker for Top-k Recommendation"☆16Dec 1, 2024Updated last year
- CNN architecture for predicting DNA binding sites for Transcription Factors☆53Feb 6, 2019Updated 7 years ago
- [WSDM'2025] "MixRec: Heterogeneous Graph Collaborative Filtering"☆20Dec 19, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆30Updated this week
- The official PyTorch implementation for SIGIR 2024 paper "SIGformer: sign-aware graph transformer for recommendation".☆22Sep 4, 2024Updated last year
- Global optimization using mixed integer quadratic programming on non-convex two-way interaction truncated linear multivariate adaptive re…☆16Mar 14, 2021Updated 5 years ago
- Code for GaitForeMer.☆23Aug 10, 2023Updated 2 years ago
- Two case studies designed to study variability in optimization approach and wake models for wind farm layout optimization. In accordance …☆19Dec 29, 2021Updated 4 years ago
- Collection of graphs with communities and ground truth partition☆20Jan 5, 2024Updated 2 years ago
- Implementation of inventory control policy parameters computation algorithms☆19Feb 28, 2022Updated 4 years ago
- [ICDE'2024] "GraphAug: Graph Augmentation for Recommendation"☆23Sep 17, 2024Updated last year
- A repository of wind plant flow models connected to FUSED-Wind☆26Jul 18, 2018Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Code for AAAI 2024 paper "PSC-CPI: Multi-Scale Protein Sequence-Structure Contrasting for Efficient and Generalizable Compound-Protein In…☆28Feb 8, 2025Updated last year
- Pretrained SMILES transformation model for finetuning for diverse molecular tasks.☆56Feb 22, 2022Updated 4 years ago
- A Framework for Chromatin Architecture Data Processing, Handling and Analysis☆11Updated this week
- RIESLING: Super-enhancer identification. (Rapid Identification of EnhancerS LInked to Nearby Genes)☆10Jun 28, 2018Updated 8 years ago
- [NBME] Interpretable identification of cancer genes across biological networks via transformer-powered graph representation learning☆24Sep 2, 2025Updated 10 months ago
- Protein Sequence Evolutionary Information Language Model☆14Oct 5, 2023Updated 2 years ago
- Codewars katas(Python, SQL, C++) and freeCodeCamp projects☆10Dec 27, 2024Updated last year