DeepSTF: Predicting transcription factor binding sites by interpretable deep neural networks combining sequence and shape
☆11Mar 16, 2023Updated 3 years ago
Alternatives and similar repositories for DeepSTF
Users that are interested in DeepSTF are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- BertSNR: an interpretable deep learning framework for single nucleotide resolution identification of transcription factor binding sites b…☆13May 27, 2025Updated 10 months ago
- ☆15Mar 12, 2025Updated last year
- 🚀 Send custom messages to Slack to notify about application status, progress, errors, health checks etc.☆13Feb 18, 2025Updated last year
- Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"☆13Apr 23, 2024Updated last year
- Speed up your research with our tool that combines Zotero and Ollama. It lets you use your own language model on your computer. Make your…☆36Mar 8, 2024Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- EasyX tutorial for BUAA Soft 2023 Summer☆14Mar 21, 2024Updated 2 years ago
- anonymous github for SGSR: Beyond Social Homophily: Score-based Generative Diffusion Models for Social Recommendations☆12Sep 18, 2025Updated 6 months ago
- Counterfactual Inference by Machine Learning and Attribution Models☆15Aug 24, 2023Updated 2 years ago
- MulinforCPI: enhancing precision of compound-protein interaction prediction through novel perspectives on multi-level information integra…☆10Jun 20, 2024Updated last year
- A website for learners of 《Introduction to Algorithms》☆21Jan 31, 2024Updated 2 years ago
- [TOIS'24] "RecRanker: Instruction Tuning Large Language Model as Ranker for Top-k Recommendation"☆16Dec 1, 2024Updated last year
- contrastive learning and pre-trained encoder for protein-ligand binding sites prediction☆37Jul 4, 2025Updated 9 months ago
- Continuous Estimation of Human Joint Angles From sEMG Using a Multi-Feature Temporal Convolutional Attention-Based Network☆14Dec 19, 2023Updated 2 years ago
- ☆19Aug 29, 2025Updated 7 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- [ACM TOMM'2025] "MMHCL: Multi-Modal Hypergraph Contrastive Learning for Recommendation"☆30Aug 13, 2025Updated 7 months ago
- [ACM TOIS] Multi-Behavior Recommendation with Personalized Directed Acyclic Behavior Graphs☆14Dec 6, 2024Updated last year
- ☆13Dec 5, 2024Updated last year
- ☆14Jan 17, 2025Updated last year
- Implementation of SIGIR'25 accepted paper, focusing on social denoising recommendation☆13Apr 8, 2025Updated last year
- A simple python module for using a variety of wake models in a single wind farm optimization structure.☆10Jun 10, 2024Updated last year
- CNN architecture for predicting DNA binding sites for Transcription Factors☆53Feb 6, 2019Updated 7 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated last year
- [WSDM'2025] "MixRec: Heterogeneous Graph Collaborative Filtering"☆21Dec 19, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- [TKDE25] Intent-guided Heterogeneous Graph Contrastive Learning for Recommendation☆19May 18, 2025Updated 10 months ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆29Mar 19, 2026Updated 3 weeks ago
- The official PyTorch implementation for SIGIR 2024 paper "SIGformer: sign-aware graph transformer for recommendation".☆21Sep 4, 2024Updated last year
- Simple PWA mobile app to track if you've drank your damn protein today or not☆37Updated this week
- Code for GaitForeMer.☆22Aug 10, 2023Updated 2 years ago
- RIESLING: Super-enhancer identification. (Rapid Identification of EnhancerS LInked to Nearby Genes)☆10Jun 28, 2018Updated 7 years ago
- A repository of wind plant flow models connected to FUSED-Wind☆26Jul 18, 2018Updated 7 years ago
- Python library for identification and masking of low-complexity regions in nucleotide sequences☆11Mar 27, 2026Updated 2 weeks ago
- [ICDE'2024] "GraphAug: Graph Augmentation for Recommendation"☆24Sep 17, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Pretrained SMILES transformation model for finetuning for diverse molecular tasks.☆56Feb 22, 2022Updated 4 years ago
- Code for AAAI 2024 paper "PSC-CPI: Multi-Scale Protein Sequence-Structure Contrasting for Efficient and Generalizable Compound-Protein In…☆28Feb 8, 2025Updated last year
- Python Implementation of MetaNeighbor scRNAseq Analysis Method☆10Nov 11, 2025Updated 5 months ago
- Collection of graphs with communities and ground truth partition☆20Jan 5, 2024Updated 2 years ago
- ☆35Aug 29, 2025Updated 7 months ago
- Two case studies designed to study variability in optimization approach and wake models for wind farm layout optimization. In accordance …☆19Dec 29, 2021Updated 4 years ago
- The ChIP-Seq peak calling algorithm using convolution neural networks☆15Jan 18, 2021Updated 5 years ago