A Snakemake-based structural variant analysis workflow leveraging OctopusV's capabilities.
☆11Mar 31, 2025Updated last year
Alternatives and similar repositories for TentacleSV
Users that are interested in TentacleSV are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Merge and compare structural variants across callers, samples, and platforms. Standardizes BND-heavy output from GRIDSS, SvABA, Sniffles,…☆51Sep 23, 2026Updated last month
- A python wrapper around SURVIVOR☆20Feb 15, 2024Updated 2 years ago
- ☆14Oct 17, 2024Updated 2 years ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆28Jul 26, 2024Updated 2 years ago
- ☆36Jan 14, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Combine structural variation outputs from long sequencing reads into a superior call set☆19Aug 6, 2025Updated last year
- STR genotyping with WGS and Amplicon/Target sequencing data☆17Feb 2, 2026Updated 8 months ago
- Snakemake workflow for the vg toolkit.☆12Mar 19, 2026Updated 7 months ago
- Tandem Repeats Caller for LOng Reads☆17May 28, 2021Updated 5 years ago
- Deep Learning Processing Library for Biological Data☆13Updated this week
- Python deployment tool for bespoke image curation projects, oriented toward scientific projects. Please cite https://academic.oup.com/gig…☆14Aug 6, 2022Updated 4 years ago
- python plotly Circos from VCF☆43Jun 20, 2024Updated 2 years ago
- online variation graph induction☆12Oct 21, 2025Updated last year
- Scripts for Shi et al. (2024). The suer-pangenome of Populus unveils genomic facets for its adaptation and diversification in widespread …☆20Apr 1, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 11 months ago
- Benchmark structural variant calls against a reference set☆18Jan 26, 2026Updated 9 months ago
- Genomic Language Model Mitigates Chimera Artifacts in Nanopore Direct RNA Sequencing☆13Oct 19, 2026Updated last week
- DIAMOND online documentation☆10Sep 2, 2020Updated 6 years ago
- VarIant SimulatOR for short, long and linked reads☆54Oct 21, 2024Updated 2 years ago
- ☆13Dec 10, 2025Updated 10 months ago
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆22Apr 28, 2023Updated 3 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A python package for showing JBrowse views☆27Jul 22, 2026Updated 3 months ago
- LASSI-Plus: A program to calculate haplotype frequency spectrum statistics☆13Sep 29, 2026Updated last month
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 7 months ago
- Snakemake-based computational workflow for neoantigen prediction from diverse sources☆22Updated this week
- A Nextflow pipeline for genome and pan-genome annotation☆17Feb 22, 2026Updated 8 months ago
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆32Apr 2, 2026Updated 6 months ago
- Versatile simulator for structural variance and Nanopore/PacBio sequencing reads☆28May 19, 2026Updated 5 months ago
- PxBLAT: An Efficient and Ergonomic Python Binding Library for BLAT☆18Updated this week
- Allstruder project. Open syringe pump/extruder for various applications.☆12Aug 4, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- nf-test utility functions☆13Sep 29, 2026Updated last month
- Method to optimally select samples for validation and resequencing☆30Apr 6, 2021Updated 5 years ago
- An easy-to-use python package can be used for genomic visual analysis☆23Apr 20, 2024Updated 2 years ago
- Concurrent I/O in ordinary Rust functions. An effect runtime and REPL built with WebAssembly fibers.☆14Oct 1, 2026Updated 3 weeks ago
- A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequences☆16Updated this week
- Structural variant (SV) analysis tools☆42Jul 1, 2024Updated 2 years ago
- To use Evo2 easily☆26Apr 7, 2026Updated 6 months ago