Documentation, models and code relating to the 3rd edition of the textbook Stochastic Modelling for Systems Biology
☆34Oct 28, 2025Updated 11 months ago
Alternatives and similar repositories for smfsb
Users that are interested in smfsb are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A pipeline to generate a Deep Nerual Network cell type deconvolution model for bulk RNASeq samples from single cell experiment data☆12Nov 17, 2020Updated 5 years ago
- Population balance analysis☆46Apr 25, 2019Updated 7 years ago
- Modelling and feature detection in palaeoenvironmental time series using additive models☆20Oct 16, 2023Updated 3 years ago
- Turning the quasi-UMI method into a bioconductor package☆11Mar 3, 2021Updated 5 years ago
- ☆19Oct 27, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- spatsoc is an R package for detecting spatial and temporal groups in GPS relocations, and measuring intragroup social dynamics.☆25Updated this week
- Linear MALDI-ToF simultaneous spectrum deconvolution and baseline removal☆11Jan 23, 2020Updated 6 years ago
- Common types and interface for discretizers of ModelingToolkit PDESystems.☆14Oct 10, 2026Updated last week
- A Bayesian group factor model with structured sparsity☆23Jan 6, 2016Updated 10 years ago
- Materials accompanying the upstrap paper☆12Oct 19, 2020Updated 5 years ago
- Data files and scripts for the ASU PHY494 class. Will be updated as we go along.☆11Jan 6, 2022Updated 4 years ago
- ☆10Jun 13, 2025Updated last year
- Interface to Lanczos SVD and eigensolvers from R☆27Jan 10, 2025Updated last year
- some code for linlog model simulation☆10Sep 16, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A step-by-step guide that shows how to do text classification by run training/inference for a custom model in Amazon SageMaker☆11May 21, 2019Updated 7 years ago
- Working files for the Docker and Kubernetes course from Udemy taught by Stephen Grider (StephenGrider)☆13Jan 25, 2023Updated 3 years ago
- Mastering Apache Camel by Packt Publishing☆13Apr 14, 2023Updated 3 years ago
- Transformer Based Embeddings of Wasserstein Distance☆28Feb 18, 2026Updated 7 months ago
- Learning Probabilistic Graphical Models in R☆32Mar 2, 2026Updated 7 months ago
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆23Mar 24, 2021Updated 5 years ago
- Self-tuning HMC algorithms and evaluations☆18Oct 10, 2024Updated 2 years ago
- R package that provides an implementation of the generic adaptive Monte Carlo Markov chain sampler proposed by Vihola (2011).☆10Jan 29, 2024Updated 2 years ago
- ☆19Apr 25, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Dynamic inference from single-cell snapshots by optimal transport☆21Mar 14, 2024Updated 2 years ago
- python simulation interface for molecular modeling. To cite this software publication: https://www.sciencedirect.com/science/article/pii/…☆13Aug 24, 2016Updated 10 years ago
- Analysis of the MoTrPAC endurance exercise training study in 6-month-old rats☆13Sep 30, 2024Updated 2 years ago
- Pipelines Example Applications☆13Nov 5, 2019Updated 6 years ago
- Rank-normalization, folding, and localization: An improved R-hat for assessing convergence of MCMC☆32Nov 10, 2021Updated 4 years ago
- Romulus: Robust multi-state identification of transcription factor binding sites from DNase-seq data☆10Mar 6, 2019Updated 7 years ago
- Source code for 'Functional Programming in R' by Thomas Mailund☆14Apr 28, 2017Updated 9 years ago
- Source code and data for the tutorial: "Getting started with particle Metropolis-Hastings for inference in nonlinear models"☆28Apr 1, 2019Updated 7 years ago
- "Discontinuous Hamiltonian Monte Carlo for sampling discrete parameters" by Akihiko Nishimura, David Dunson, Jianfeng Lu☆29Aug 18, 2018Updated 8 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆32Aug 8, 2023Updated 3 years ago
- Extreme Learning Machine using RcppArmadillo☆15Feb 1, 2026Updated 8 months ago
- ☆12Oct 2, 2026Updated 2 weeks ago
- Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structures☆12Jun 15, 2023Updated 3 years ago
- ☆12Jun 28, 2018Updated 8 years ago
- CancerMIRNome - an interactive analysis and visualization database for miRNome profiles of human cancer☆12Aug 9, 2024Updated 2 years ago
- The data API server for outbreak.info☆11Jan 27, 2025Updated last year