darrenjw / smfsbView external linksLinks
Documentation, models and code relating to the 3rd edition of the textbook Stochastic Modelling for Systems Biology
☆32Oct 28, 2025Updated 3 months ago
Alternatives and similar repositories for smfsb
Users that are interested in smfsb are comparing it to the libraries listed below
Sorting:
- Linear MALDI-ToF simultaneous spectrum deconvolution and baseline removal☆11Jan 23, 2020Updated 6 years ago
- Multiscale simulation of multi-cellular system☆11Updated this week
- workshop platform provider for running docker containers on kubernetes☆19Sep 14, 2021Updated 4 years ago
- Population balance analysis☆44Apr 25, 2019Updated 6 years ago
- An open access book on scientific visualization using python and matplotlib☆20Aug 28, 2022Updated 3 years ago
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆22Mar 24, 2021Updated 4 years ago
- Pipelines in genomics☆23Apr 7, 2022Updated 3 years ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Feb 14, 2021Updated 5 years ago
- A Bayesian group factor model with structured sparsity☆22Jan 6, 2016Updated 10 years ago
- Phylogenetic inference using Stan☆23Mar 6, 2025Updated 11 months ago
- Interface to Lanczos SVD and eigensolvers from R☆27Jan 10, 2025Updated last year
- ☆26Dec 25, 2023Updated 2 years ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Mar 13, 2023Updated 2 years ago
- Clone of the Bioconductor repository for the scRNAseq package.☆29Oct 10, 2025Updated 4 months ago
- Transcriptional burst kinetics inference and analysis described in the article "Genomic encoding of transcriptional burst kinetics" (Lars…☆39Apr 22, 2024Updated last year
- Learning Probabilistic Graphical Models in R☆31Feb 5, 2026Updated last week
- A primer on Hidden Markov Models using Stan. A Case Study submitted as a candidate for a contributed talk in StanCon 2018. Under review.☆31Feb 1, 2018Updated 8 years ago
- A Julia implementation of Bayesian linear regression using marginal likelihood for hyperparameter optimization, as presented in Chris Bis…☆29Jan 20, 2022Updated 4 years ago
- "Discontinuous Hamiltonian Monte Carlo for sampling discrete parameters" by Akihiko Nishimura, David Dunson, Jianfeng Lu☆29Aug 18, 2018Updated 7 years ago
- Analysis of the MoTrPAC endurance exercise training study in 6-month-old rats☆11Sep 30, 2024Updated last year
- GATlab: a computer algebra system based on generalized algebraic theories (GATs)☆38Jan 21, 2026Updated 3 weeks ago
- Rank-normalization, folding, and localization: An improved R-hat for assessing convergence of MCMC☆32Nov 10, 2021Updated 4 years ago
- python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.☆34Feb 1, 2024Updated 2 years ago
- Epimap processing and analysis code repository☆33Aug 22, 2022Updated 3 years ago
- Solvers for the Eikonal equation☆36Nov 29, 2024Updated last year
- Julia code in Kenneth Lange's Algorithms from THE BOOK☆31Apr 28, 2025Updated 9 months ago
- A julia package for representing and manipulating model semantics☆78Jul 27, 2020Updated 5 years ago
- Command-line tools to support meta-analysis using a library managed in Zotero☆11Feb 9, 2023Updated 3 years ago
- 存储自己平时练习编写的爬虫spider☆10Jun 9, 2018Updated 7 years ago
- A list of (detailed, non-stochastic) action potential models, with links to papers, source code, CellML and Myokit implementations☆10Oct 14, 2025Updated 4 months ago
- ENriching Health data by ANnotations of Crowd and Experts☆10Sep 13, 2021Updated 4 years ago
- MATLAB code for simulating the extraction of espresso style coffee☆10Jan 15, 2019Updated 7 years ago
- Course materials for Computational Statistics, PhD course at EMAp.☆36Jun 25, 2025Updated 7 months ago
- ☆11Dec 23, 2024Updated last year
- Nonconvex Regularized Robust Regression via I-LAMM Algorithm☆11May 9, 2022Updated 3 years ago
- Kyoto Encylopedia of Genes and Genomes (KEGG) NetworkX Topological parser automates downloading, parsing, and converting from a KEGG Mark…☆11May 8, 2024Updated last year
- ☆38Jun 3, 2024Updated last year
- A collection of code (mostly Jupyter notebooks) associated with entries on my blog☆12Oct 8, 2017Updated 8 years ago
- Multi Channel Attribution☆10Mar 7, 2017Updated 8 years ago