darrenjw / smfsb
Documentation, models and code relating to the 3rd edition of the textbook Stochastic Modelling for Systems Biology
☆32Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for smfsb
- Online Principal Component Analysis☆22Updated 2 years ago
- The main website for the OpenMendel project.☆12Updated 2 years ago
- Vintage Sparse PCA for Semi-Parametric Network Analysis☆25Updated 2 weeks ago
- Entropy, mutual information and higher order measures from information theory, with various estimators and discretisation methods.☆66Updated last year
- Jupyter notebooks showing to implement statistical functions.☆14Updated 4 years ago
- Algorithms for fit constrained lasso☆8Updated 6 years ago
- Approximate Bayesian Computation (ABC) algorithms for likelihood free inference in julia☆52Updated last month
- Residual Component Analysis☆10Updated 7 years ago
- generalized principal component analysis (GLM-PCA) implemented in python☆57Updated 3 years ago
- ☆25Updated 4 years ago
- A Bayesian zoo☆14Updated 4 years ago
- Stochastic simulation of next-generation sequencing data from neutrally evolving tumors☆10Updated 8 years ago
- A module for fitting Hidden Markov Models in Julia☆9Updated 8 years ago
- Analyzing RNA-Seq with approximate likelihood☆26Updated 3 years ago
- Learn Julia in one workday!☆11Updated 4 years ago
- An interactive visualization tool that transforms probabilistic programming models into an "Interactive Probabilistic Models Explorer".☆24Updated 5 months ago
- Applied Statistics for High-Throughput Biology☆16Updated 3 months ago
- StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks☆40Updated 2 years ago
- Compositional data analysis in Julia☆60Updated this week
- Stochastic Gillespie-type simulations using Julia☆62Updated 3 months ago
- Lecture notes for Eric Anderson and Matthew Stephens SISG course on MCMC for Statistical Genetics☆27Updated 3 years ago
- Bayesian sparse regression with regularized shrinkage and conjugate gradient acceleration☆19Updated last month
- This R code implements the GSPPCA algorithm for high-dimensional unsupervised feature selection.☆10Updated 4 years ago
- Causal Inference with Invariant Prediction☆25Updated 3 years ago
- Topics in statistical computing @ ISU☆18Updated 9 years ago
- Multifactorial modeling of response to checkpoint inhibitor immunotherapy from tumor, immune, and clinical features☆14Updated 6 years ago
- Online material for the Perspective: "Julia for Biologists" presented at JuliaCon 2021: https://www.youtube.com/watch?v=gRj7E5kYG1I☆96Updated 2 years ago
- course website: computing tools for data analytics☆9Updated 3 years ago
- A thorough, straightforward, un-intimidating introduction to Gaussian processes in NumPy.☆16Updated 6 years ago
- Causal and probabilistic reasoning with continuous time dynamical systems☆17Updated this week