WGLab / Workshop_Annotation
Course materials for "Variants Annotate and Phenotype Analysis"
☆22Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for Workshop_Annotation
- Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq☆46Updated 4 years ago
- From RNA-seq raw reads to enriched pathways by DEGs☆30Updated 6 months ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆47Updated 2 years ago
- ☆24Updated 4 years ago
- ☆73Updated 9 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 3 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆50Updated 3 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆101Updated 3 months ago
- Easily download publicly available GWAS summary statistics.☆72Updated 11 months ago
- An R package to time somatic mutations☆59Updated 3 years ago
- ☆56Updated 4 years ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆61Updated 3 years ago
- ☆41Updated 3 years ago
- ☆77Updated 3 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆43Updated 3 months ago
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆88Updated last month
- An integrated platform for modeling gene-regulatory dynamics and networks☆27Updated 3 months ago
- Repository for Cibersortx☆51Updated 3 years ago
- ☆51Updated 6 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆50Updated last year
- An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline☆61Updated 2 weeks ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated last year
- Tutorial Website☆53Updated 3 years ago
- Analysis pipeline for ATAC-seq Data☆60Updated 3 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆75Updated 2 years ago
- My youtube programming scripts☆38Updated last month
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 6 years ago
- Install GISTIC2 by one line code; GISTIC2 docker image☆40Updated last year
- Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…☆25Updated 3 years ago
- Bayesian network plot for the enrichment analysis results☆60Updated last month