TheJacksonLaboratory / cs-nf-pipelines
The Jackson Laboratory Computational Sciences Nextflow based analysis pipelines
☆21Updated 3 weeks ago
Alternatives and similar repositories for cs-nf-pipelines:
Users that are interested in cs-nf-pipelines are comparing it to the libraries listed below
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- An R package for predicting HR deficiency from mutation contexts☆28Updated 2 months ago
- A toolkit for working with ATAC-seq data.☆24Updated 10 months ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- ☆33Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated last month
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 6 years ago
- ☆33Updated 2 years ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- simplified cellranger for long-read data☆18Updated last week
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- ☆16Updated 6 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 9 months ago
- GTEx analysis scripts☆20Updated 8 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Junction Based Analysis of Splicing Events for RNA-Seq☆32Updated 6 years ago
- Filtering of PDX samples for mouse derived reads☆27Updated 2 years ago
- How to use CENTIPEDE to determine if a transcription factor is bound.☆26Updated 7 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆32Updated 3 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆50Updated last week
- Personal diploid genome creation and coordinate conversion☆24Updated 3 weeks ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆26Updated 2 weeks ago
- ☆34Updated 5 years ago