TGAC / RAMPART
A configurable de novo assembly pipeline
☆28Updated 8 years ago
Alternatives and similar repositories for RAMPART:
Users that are interested in RAMPART are comparing it to the libraries listed below
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 8 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 8 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- Assemble the Genome in a Bottle sequencing data☆10Updated 7 years ago
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Updated 8 years ago
- ☆37Updated 4 years ago
- Hemang Parikh☆11Updated 9 years ago
- Fast but inaccurate adapter trimmer for Illumina reads☆14Updated 2 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Pipeline for poreathon☆14Updated 10 years ago
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- DNA assembler developed on FER (Croatia), RBI (Croatia) and GIS (Singapore)☆18Updated 9 years ago
- Rapid competitive read demulitplexer. Made with tries.☆24Updated last year
- Alignment and variant-calling pipeline for Illumina HIV sequences.☆11Updated 4 years ago
- Prioritize structural variants based on CADD scores☆28Updated 4 years ago
- Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.☆22Updated 6 years ago
- Scripts for implementing read until and other examples.☆31Updated 4 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- ☆19Updated 7 years ago
- Scaffolding with assembly likelihood optimization☆20Updated 4 years ago
- ☆15Updated 4 years ago
- Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)☆14Updated 7 years ago
- Novel Adjacency Identification with Barcoded Reads☆13Updated 2 years ago
- Structural variation and indel detection using rolling local string graph assembly☆9Updated 8 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆33Updated 2 months ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆10Updated 7 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago