Alternatives and similar repositories for nightingale

Users that are interested in nightingale are comparing it to the libraries listed below

• calipho-sib / feature-viewer
  Library to visualize protein sequence features in javascript using D3 - From SIB CALIPHO group; neXtProt project
  ☆115Updated 10 months ago
• gecrooks / weblogo
  WebLogo 3: Sequence Logos redrawn
  ☆153Updated 2 months ago
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆74Updated last month
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆82Updated last week
• ViennaRNA / forna
  Create force-directed graphs of RNA secondary structures.
  ☆104Updated 5 years ago
• jbkinney / logomaker
  Software for the visualization of sequence-function relationships
  ☆201Updated last month
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆135Updated 7 months ago
• soedinglab / MMseqs2-App
  MMseqs2 app to run on your workstation or servers
  ☆87Updated last week
• FowlerLab / Enrich2
  Tool for deep mutational scanning experiments.
  ☆52Updated 4 months ago
• dosorio / Peptides
  An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.
  ☆88Updated last year
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆88Updated 5 months ago
• ProteomicsML / ProteomicsML
  Community-curated tutorials and datasets for ML in proteomics
  ☆54Updated 3 months ago
• VivianMonzon / Reciprocal_Best_Structure_Hits
  ☆11Updated 2 years ago
• UWPR / Comet
  An tandem mass spectrometry (MS/MS) sequence database search tool.
  ☆51Updated 2 weeks ago
• UCLOrengoGroup / cath-tools
  Protein structure comparison tools such as SSAP and SNAP
  ☆64Updated last year
• Nesvilab / philosopher
  PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering
  ☆117Updated last week
• davidhoover / DNAWorks
  Automatic oligonucleotide design for PCR-based gene synthesis
  ☆46Updated 5 years ago
• bigbio / proteomics-sample-metadata
  The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets
  ☆89Updated 3 months ago
• ViennaRNA / forgi
  An RNA manipulation library.
  ☆56Updated last year
• rcsb / rcsb-saguaro
  1D Feature Viewer
  ☆51Updated 2 months ago
• CompOmics / ThermoRawFileParser
  Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono
  ☆214Updated 3 weeks ago
• althonos / pyhmmer
  Cython bindings and Python interface to HMMER3.
  ☆140Updated 3 weeks ago
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆146Updated last year
• Lattice-Automation / seqfold
  nucleic acid folding
  ☆94Updated 11 months ago
• SBRG / ssbio
  A Python framework for structural systems biology
  ☆109Updated 4 years ago
• SysBioChalmers / GECKO
  Toolbox for including enzyme constraints on a genome-scale model.
  ☆76Updated 2 months ago
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆82Updated last month
• ebi-uniprot / ProtVista
  A BioJS viewer for protein sequence features
  ☆50Updated 2 years ago
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆40Updated 2 weeks ago
• MSGFPlus / msgfplus
  MS-GF+ (aka MSGF+ or MSGFPlus) performs peptide identification by scoring MS/MS spectra against peptides derived from a protein sequence …
  ☆79Updated last year